Hydrogenophaga sp. PAMC20947: E5678_20620
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Entry
E5678_20620 CDS
T05960
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
hyc
Hydrogenophaga sp. PAMC20947
Pathway
hyc02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
hyc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
E5678_20620
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
hyc02022
]
E5678_20620
02035 Bacterial motility proteins [BR:
hyc02035
]
E5678_20620
Two-component system [BR:
hyc02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
E5678_20620
Bacterial motility proteins [BR:
hyc02035
]
Pilus system
Twitching motility proteins
E5678_20620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
Response_reg
HTH_8
AAA_5
AAA
AAA_16
AAA_2
HTH_30
VpsR
Motif
Other DBs
NCBI-ProteinID:
QCB48216
UniProt:
A0A4P7RDI9
LinkDB
All DBs
Position
complement(4527465..4528946)
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AA seq
493 aa
AA seq
DB search
MPSDQIAAILVVDDEPDLRTLYELTLLREGHDLTCAADLQEARACLAQRNFDVLITDMRL
PDGLGLELLREISGQQRRETCIVITAYGSAENAVEALKSGAFDYLTKPVDLKQLRGAVAA
ALQSQRQVSGGLTATQPTRAPGVPLAPAPPPSGVQALARIVGASPAMEQIRHRIEKVSSS
MAPVLILGESGTGKELVARAVHDCSHRSTGPFVAVNCGAIPDNLIEAEFFGARKGAYTGA
SQDREGYFQAAKGGTLFLDEIGDLPLAMQAKLLRVIQERRVRPLGGVQEENVDVRLVSAT
HRDLAALVKSGDFRQDLFYRLNVIGLRTPPLRERREDLPLLARVLLERICNESGHPAPHL
SPQAMDWLQNCELAGNVRELENLLQRALALSTGPNLEPSDFADPSDPPPEATPDRPATSD
DAPDATTEAPPDIPSDLQSFLDDQERQVLLKALKETDFNRTAAAARLGLNLRQMRYRIQR
LGIEAPTPDGDPF
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgccttctgatcaaattgctgccattctggtcgtcgacgacgagcccgatctgcgcacc
ctctacgagctcaccctgttgcgcgagggtcacgacctgacctgcgccgccgatctgcaa
gaagcccgcgcctgcctggcgcaacgcaattttgacgtgctcatcaccgacatgcgtttg
ccggacggcctcgggctggagctgttgcgcgaaatatcaggccaacaacggcgcgaaacc
tgcatcgtcatcaccgcctatggttcggccgaaaatgctgtcgaggcgctcaaatcaggc
gccttcgactacctcaccaaaccggttgacctcaagcaactccggggggccgtggccgcc
gcgctgcaaagccagcgccaggtctcaggcgggctgacagcaacccagcccacccgggcc
ccgggcgtgccgctcgccccggcgccaccaccatcaggcgttcaggcactggcccgcatc
gtcggcgcctcaccggcgatggaacagatacggcaccggatcgaaaaagtgtcctccagc
atggcgccggtgctgatccttggcgagtccgggaccggcaaggaactggtggcccgtgcc
gtgcacgactgcagccaccgctcaacaggcccgtttgtcgcggtcaactgtggcgccatc
cccgacaacctgatcgaggccgagttctttggtgcccgcaagggtgcctacaccggcgca
tcccaggaccgggagggctactttcaagcggccaagggcggcacgctcttcctcgacgaa
atcggagacctcccgctggccatgcaggccaagctcctgcgcgtcatccaggaacgccgg
gttcgcccactgggtggtgtgcaggaagaaaacgtggacgtgcgtctggtgagcgccacc
catcgggatctggccgcgctggtcaagtcgggcgatttccggcaagacctgttctaccgc
ctcaacgtcatcggcttgcgcaccccacccctgcgtgagcgccgggaagacctgccgttg
ctcgcacgcgtgttgctggagcgcatttgcaacgaatcgggtcacccggccccccacctg
tctccgcaggccatggactggctacaaaactgtgagttggcgggcaacgtgcgcgagctc
gaaaacctgctccagcgagcgctggccctgagcacaggccccaacctcgaaccttcggac
ttcgctgatccgtccgatccgccccctgaagcaacacccgatcgcccggccacgagcgac
gacgcacccgatgcaacaacagaggccccgcctgacataccgtcagaccttcaatccttc
ctcgatgaccaggagcgccaggtgctgctcaaggccctgaaggaaaccgacttcaaccga
accgctgcggcggccagactgggcctgaacctgcgccagatgcgctaccgcatccagcgc
ctgggcatcgaagcgcccacccccgatggcgatccattctga
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