Hymenobacter sp. DG25B: PK28_02000
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Entry
PK28_02000 CDS
T03500
Name
(GenBank) recombinase RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hyd
Hymenobacter sp. DG25B
Pathway
hyd03410
Base excision repair
hyd03430
Mismatch repair
hyd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PK28_02000
03430 Mismatch repair
PK28_02000
03440 Homologous recombination
PK28_02000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyd03400
]
PK28_02000
DNA repair and recombination proteins [BR:
hyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PK28_02000
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PK28_02000
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PK28_02000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AIZ62759
LinkDB
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Position
453263..454987
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AA seq
574 aa
AA seq
DB search
MQKRWIRKPAPDPEKVRHLADALRVNPSIVALLCQRDVCTFEEARAYFRPSLEELPDPLL
MRDMDRAVTRLQHALHAGEKVLVFGDYDVDGTTSVAVVYAYLHAFFGSERIDYYIPDRYK
EGYGISDAGIDFAADNGYALIIALDCGVKAVDKIAYANTKGVDFIICDHHLPGDELPAAI
AVLDPKRADCPYPFKELSGCGVGFKLMQAFCQHLGQDEAPLHELLDLLSVSIAADIVPIT
GENRTLAYHGLRLLNDAAHPQRPGLDALRDLAGLRESKLNISSLVFGFSPRINAAGRMGD
AKRAVSMLLAQSKEEAFEKASVVDKTNQDRRGFDTRITKEALDMIEADASMLTARSTVLY
NETWHKGVIGIVASRCLDKYYRPTIILTESNGKATGSARSVMGFDVHQAILECADLLDQF
GGHMYAAGLTLPVENVPAFQRRFEEVVSARITDEQLIPAVEIDGELALSDITMSFYKLLC
QMEPFGPGNANPTFVSHGVHAQPDSARIVGTSHLKIVLTQDGHHSVDAIGFGLGDFLPQI
QEGRPFSVCYTVELNEYRGVKTLQLRLKDLRWEE
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaacgatggatccggaagcctgcgcccgaccctgaaaaggtccggcacctggcc
gacgccttgcgcgtcaatccttccattgtggccctgctgtgccagcgcgacgtctgcacc
tttgaggaagcccgcgcatacttccgcccctccctggaggaactgcccgaccccttgctg
atgcgcgacatggaccgtgccgtaacccgcctgcagcacgccctgcacgccggggaaaaa
gtactggtgttcggcgactacgacgtggacgggactacctctgtggccgtggtgtatgcc
tatctgcacgcctttttcgggtcggagcgcatcgactactacattccggaccgctacaaa
gaaggttacggcatttcggacgccggcattgactttgccgctgacaacggctacgccctg
attattgcgctggactgcggcgtgaaggccgtggataaaatagcctacgccaataccaag
ggcgttgattttatcatttgcgaccaccacttacctggtgatgagctgccggcggccata
gctgtgctggaccccaagcgcgccgactgcccgtatccgtttaaggagctttccggctgt
ggcgtgggctttaagctgatgcaggctttctgccagcacctgggtcaggacgaggccccg
ctgcacgagctgctggacttattatcggtgagtattgcggcggatatcgtgcccattacc
ggcgagaaccgcacgctggcttaccacggcctgcgcctgctcaacgacgccgcgcacccc
cagcgcccgggcctcgatgccctgcgggacctggccgggctgcgggaaagcaagctcaac
ataagcagcctggtctttggcttctcgccccgcattaacgcggccggccgcatgggcgac
gccaagcgtgcggtttctatgctgctggcccagagcaaggaagaagcctttgaaaaggcc
agtgtagtagacaaaaccaaccaggaccgccgcggcttcgatacgcgcatcaccaaggaa
gctctggacatgattgaggccgacgccagcatgctcacggcccgctccacggtgctctac
aacgaaacctggcacaagggcgtcatcggtattgtagcgtcccgctgcctcgataagtat
taccggcccaccatcatcctcaccgaaagcaacggcaaagccaccggctcggcccgctcc
gtaatggggtttgatgtgcaccaggccattctggaatgcgccgatttgctggaccagttt
ggtgggcacatgtacgcggccggcctcacgctgccggtagaaaacgtgcccgctttccag
cggcgctttgaggaagtagtgtcggcgcgcattacggatgagcagctgattccggcggta
gaaattgatggggaattggccctgagcgacatcaccatgagcttctacaagctgctctgc
cagatggagcccttcggtcccggcaatgccaatcccaccttcgtttcgcacggcgtacac
gcccagcccgactccgcgcggattgtgggcacttcgcacctgaaaattgtgctcacgcag
gatggccaccacagcgtagatgccattggctttggcctgggcgacttcctgccccagata
caagagggccgcccgttcagcgtgtgctatacggtggagctgaacgagtaccgcggcgta
aaaactctgcagctgcgcctgaaagatttgcgctgggaagagtag
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