Hymenobacter sp. DG25B: PK28_04120
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Entry
PK28_04120 CDS
T03500
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hyd
Hymenobacter sp. DG25B
Pathway
hyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PK28_04120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyd03019
]
PK28_04120
Enzymes [BR:
hyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PK28_04120
Messenger RNA biogenesis [BR:
hyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PK28_04120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AIZ63083
UniProt:
A0A0A7LKX3
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All DBs
Position
complement(952782..954206)
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AA seq
474 aa
AA seq
DB search
MSDSPQPAAFADFKLNKQLLTAVAEAGFEHPTPVQEQTIPLLLAGHDVLGIAQTGTGKTA
AFGLPLLMKVKYAQGVNPRALILAPTRELAMQLESHLRKMAVHTDLRIFAIYGGLGPKTQ
IETIAKGVDILIATPGRLMELYLKGNLVLKDIKTLVLDEADKMMDMGFMPQIRRILEVIP
SKRQNVLFSATMPDKVSVLSEEFLEFPVRVEVTPAATSAQNVTQSLYEVPNLLTKINLLE
YLFLDWDAFHRVMIFTRTKEHAENVASFLKRKAHGEVRAIHGNKGQNVRINAMEAFKAGE
IRFLVATDVAARGIDVPQVSHVINFDVPLVYDDYVHRIGRTGRAQHTGAAITFANQAEMH
HMGRIEELINQKIPLLPLPPEVKVMETQFDEQQGMDREIDERRRREDPSFQGAFHERKEY
VKPGVTIDKRTGKTYQEGPNRSQKGNKANPSKKTASKPAVKAAKAAMARAKRRK
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattcgccccagccggcagcgtttgccgatttcaagctcaacaagcaattgctc
acggccgtggccgaagcaggctttgagcaccctacgcccgtgcaggagcaaaccattccg
ctgctgctggcgggccacgacgtgctaggcattgcccagaccggcaccggcaaaaccgcc
gccttcggcctgccgctgctcatgaaggtgaagtatgcgcaaggcgtaaacccaagggcc
ctgattctggcccctacccgcgagctggccatgcagcttgaaagccacctacgcaagatg
gccgtgcacaccgacctgcgcatattcgccatttacggcggtctgggtcccaaaacccag
attgaaaccattgccaagggcgtagacattctgattgccacgcccggccgcctcatggag
ctgtacctgaaaggcaacctggtgctaaaggatattaagaccctggtgctggatgaggcc
gacaaaatgatggatatgggctttatgccccagatccgccgcattctggaggtaattcca
agcaagcgccagaatgtgctgttctctgccaccatgcccgataaagtatcggtgctcagc
gaggaattcctggaattcccggtgcgggtggaggtaacccccgccgccacctcggcccag
aatgtgacgcagtccttgtatgaggtgcccaacctgctcaccaagattaacctgctggaa
tacctgtttctggactgggacgctttccaccgcgtcatgatttttacccgcaccaaggag
cacgccgaaaatgtggccagcttcctgaagcgcaaagcccacggcgaggtgcgcgccatt
catggcaacaaaggacagaacgtgcgcatcaacgccatggaagcctttaaggccggggaa
atccgctttctggtagctaccgatgtagccgcccgcggcatcgacgtgccccaggtaagc
cacgttattaactttgatgtgccgctggtgtatgatgactacgtgcaccgcattgggcgc
accggccgggcgcagcacacgggggccgctattacctttgccaaccaggccgagatgcac
cacatgggccgcattgaggagctcatcaaccagaaaattccgctgctaccgctgccgccg
gaggtgaaggtgatggaaacccagttcgatgagcaacagggcatggaccgggagatagat
gagcgccgccgccgtgaggacccctccttccagggtgccttccatgagcgcaaagagtat
gtgaagcccggcgtaaccatagacaagcgcaccggcaaaacctatcaggaagggcccaac
cgcagccagaaaggcaacaaagccaacccgtctaaaaagacggcctccaagcccgccgtg
aaagccgccaaagcggccatggcccgggccaagcgccggaagtaa
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