Hymenobacter sp. DG25B: PK28_07330
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Entry
PK28_07330 CDS
T03500
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hyd
Hymenobacter sp. DG25B
Pathway
hyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PK28_07330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyd03019
]
PK28_07330
03400 DNA repair and recombination proteins [BR:
hyd03400
]
PK28_07330
Enzymes [BR:
hyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PK28_07330
Messenger RNA biogenesis [BR:
hyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PK28_07330
DNA repair and recombination proteins [BR:
hyd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PK28_07330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
FeoC
Motif
Other DBs
NCBI-ProteinID:
AIZ63549
UniProt:
A0A0A7LK20
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All DBs
Position
1710393..1712312
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AA seq
639 aa
AA seq
DB search
MPHPTDDILHVLRQTWGHTQFRPLQEDIIRSVLAGQDTLALLPTGGGKSICFQVPALARP
GLCLVVSPLIALMKDQVENLRKRGIKAEAVFSGMTHTEIDQTLDNCVYGPVKFLYVSPER
LLTDMFRARVGKMKVSLLAVDEAHCLSQWGYDFRPPYLKIAELRELLPGVPCIALTATAT
EQVRQDIVEKLHFGATHRLFQQSFARPNLSYSVLSTEDKLKRLLEVVRGVGAEKTSIVYA
RTRRQTEDTAAFLQQHNVVAAAYHAGLPAEQRTRTQQDWMGNKTRCIVATNAFGMGIDKP
DVRLVVHLDAPDNLEAYYQEAGRAGRDEKYAFAVLLSGPNDADELRRRTRQAYPPLDVVR
RVYQALANFSRTAVGGGELVAFDFDLQQFAETYRLKALDAHNSLRTLAREGFVQLNEAVN
NPARVHIPINHTDLYRFQVANQQHDQLIKSLLRFNGGELFAGFQRISENSLAQHLKLSVV
DVRKMLLFLHRSGIIQYQPKHESPQALFTTPRFDADKLPLDQKRLLQAQELAVHKTESVI
RYTAGGRCRQQLLLEYFGELDAPACGVCDFCLAKKKARQDAAPTPALREQLLKLLRTTPQ
TPREVLAHFVPGQAPAVTELLRELVERGELKYAPDGRLG
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaccccaccgacgacattctgcatgtattgcgccagacgtgggggcacacgcag
ttccggccgctgcaggaggatattatccgctcggtgctggcggggcaggatacgctggct
ttgctgcccacgggcggcggcaaaagtatctgctttcaggtgccggcgctggcccggccg
ggcttgtgcctggtagtttcgccgctcattgccctgatgaaggaccaggtggaaaacctg
cgcaagcgtggcatcaaggccgaggccgttttctccggcatgacccacaccgaaatcgac
cagacgctggacaactgcgtgtatggcccggtgaagttcctgtacgtgagtcccgagcgc
ctgctgaccgatatgttccgggcccgcgtgggcaagatgaaagtaagcctactggccgta
gacgaagcccactgcctttcccaatggggctacgattttcgcccgccctacctgaaaatt
gcggagctgcgcgagctgctgcccggcgtgccctgcattgccctcacggccaccgccacc
gagcaggtgcggcaggatatagtagaaaagctgcatttcggggccacgcatcggttgttt
cagcagagctttgcccgacctaatctctcgtattcggttttgagcacggaagataaactc
aagcggctgctggaagtagtgcgtggggtaggggccgaaaaaaccagcattgtgtatgcc
cgcacacgccgccagaccgaggatacggctgcttttctccaacagcacaacgtagttgcg
gccgcctaccacgccggcctgcccgccgagcagcgcacccgcacccagcaggactggatg
ggcaacaaaacgcgctgcatcgtggccaccaatgccttcgggatgggcatcgataagccc
gatgtgcgcctggtggtgcacctggatgcgcccgacaacctggaggcctactaccaggaa
gccggccgcgcgggtcgcgacgaaaagtacgcttttgccgtgctactctccggccccaac
gatgccgacgagctgcgccgccgcacccggcaggcctacccgccgctggatgtggtgcgc
cgcgtgtaccaggccctggccaatttttcccgcactgccgtaggtggcggcgagctggta
gccttcgattttgacctgcagcagttcgccgaaacctaccgcctcaaggccctggatgcg
cataatagcctgcgcacgctggcccgggagggcttcgtgcagctgaacgaggccgtgaac
aaccccgcccgcgtgcacatccccatcaaccacaccgacctgtaccgcttccaggtagcc
aaccagcagcacgaccagctgattaagagtctgctgcgctttaatgggggcgagctgttc
gcaggcttccagcggatttcggaaaacagcctggcccagcacctgaagctaagcgtggtg
gatgtgcgcaagatgctattgtttctgcaccggtcgggcatcattcagtaccagcccaag
cacgagtcgccgcaggcgctgtttaccaccccgcgctttgatgccgataagctccccctg
gaccagaagcgcctgctgcaggcgcaggagctggcggtacacaaaacggagtccgtcatt
cgctacacggccggcgggcgctgccgtcagcaattgttgctggaatattttggtgagctg
gatgcgccggcctgcggcgtgtgcgacttctgcctcgccaaaaagaaagccagacaggac
gccgcgcccacacccgcgctgcgggagcagctgctaaagctgctccgcaccaccccgcaa
accccacgggaagtgctggcgcatttcgtgcctgggcaggctccggccgtaacggagttg
ctgcgggaactggtggagcgaggcgagctgaaatacgcgccggatggaaggctgggttaa
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