Hymenobacter sp. DG25B: PK28_08805
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Entry
PK28_08805 CDS
T03500
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hyd
Hymenobacter sp. DG25B
Pathway
hyd03420
Nucleotide excision repair
hyd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PK28_08805
03430 Mismatch repair
PK28_08805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyd03400
]
PK28_08805
Enzymes [BR:
hyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PK28_08805
DNA repair and recombination proteins [BR:
hyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PK28_08805
MMR (mismatch excision repair)
Other MMR factors
PK28_08805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PcrA_UvrD_tudor
ResIII
AAA_11
nSTAND3
CarD_TRCF_RID
Motif
Other DBs
NCBI-ProteinID:
AIZ63763
LinkDB
All DBs
Position
complement(2078011..2080269)
Genome browser
AA seq
752 aa
AA seq
DB search
MALDYHKLLNPSQAAAVLHTEGPCMIIAGAGSGKTRVLTYRIAHLLEKGVDPFNILALTF
TNKAAKEMRARIEKVVGPEAKNVWMGTFHSIFARILRSEADKIGFPRSFTIYDTQDSKTL
IGQIVKELELDDKLYKPAMVLGRISAAKNKLISVHQYVNDPVIRQDDEAALRPKIGAIYQ
QYFNRCFKAGAMDFDDLLFNTNVLFKDHPDVLNKYQHIFKYVMVDEYQDTNYSQYLITRK
LAAKDRNICVVGDDAQSIYAFRGADIQNILNFEKDYPELQVFKLEQNYRSTKNIVKAANS
VIKNNQAQLRKDVFSDNEEGPLIEVLKAASDNEEGKLVSQSIYEDKMNQHLSYDDFAILY
RTNAQSRAMEEALRKLNIRYKIIGGLSFYQRKEIKDLVAYLRLTVNPNDEQALRRVINYP
KRGIGDTTISKLINAAEESNHTIWEVVANADQFLPTRVSNPVVDFAEKIKSYTAVAAKED
AFEAAKFIAKNSGMIEELYADKSIEGLSRYENIQELLNGIKAYTEDAEREDKSLGAFLQD
IALVTDSDLKDAKDEGESVTLMTIHSAKGLEFRNVYIVGMEENLFPSQMMITSRADLEEE
RRLFYVAITRAEKKLTLSYATSRYQWGNLRSCEKSRFLDEIDPQYVDFKFSAGPAGSGSG
DSPFGHVFERRSNLIPPAPRKTVATKYVAPFDFQPSDTSNLQTGQRVEHPKFGFGKVTQL
ETQAGSTKAIIHFEEVGEKTLLLSFAKLRVLG
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggcactagattatcacaaacttctgaatccatcgcaggcggcggcggtattgcacacc
gaaggcccctgcatgattatagccggcgcgggctccggcaaaacgcgcgtgctcacgtac
cgcattgcccacttgctggaaaaaggcgttgatccgttcaatattctggcccttaccttc
accaacaaggccgccaaagaaatgcgcgcccggattgagaaggtggtaggcccggaggcg
aaaaacgtatggatgggcaccttccacagcatttttgcccgcattctgcgctccgaggcc
gataaaattggttttccccgctccttcaccatctacgacacgcaggactccaaaaccctg
attgggcagattgtgaaagagctggagctggacgacaagctctataagcccgctatggtg
ctgggacgcatatcggcggccaaaaacaaactgatttccgtgcatcagtacgtgaatgac
cccgttatccggcaggacgacgaagcagcgctgcggcccaaaatcggggctatttaccag
cagtatttcaaccgctgtttcaaggccggcgccatggacttcgatgatctgctgttcaac
accaacgtactgttcaaggaccatccggacgtgctcaacaagtaccagcacatctttaag
tatgtgatggtggacgagtaccaggacaccaactactcccagtacctgattacgcgcaag
ctggccgccaaggaccggaacatttgcgtggtgggcgatgatgcccagagcatttatgcc
ttccggggcgccgatattcagaacatcctcaacttcgagaaagactatccggagctgcag
gtgttcaaactggagcagaactaccgctctaccaagaacattgtgaaggcggccaattcc
gtcatcaaaaacaaccaggctcagctgcgcaaagacgttttctctgacaacgaggaaggc
ccgctgattgaggtactgaaagctgcttctgataacgaggaaggcaagctggtttcccag
agcatctacgaggacaagatgaaccagcatctttcctatgatgactttgccattctgtac
cgcaccaatgcccagagccgggctatggaagaagccctgcgcaaactcaatatccgctac
aaaatcattgggggcctgagcttttaccagcgcaaggaaatcaaggacctggtggcttac
ctgcgcctcaccgtaaacccgaacgacgagcaggccctgcgccgggtgattaactacccc
aagcgcggcatcggcgacaccaccatcagcaagctgattaacgcggccgaggaatctaac
cacaccatttgggaagtggtagccaacgccgaccagttcctgcccacccgcgtgtctaac
ccagtggtggacttcgctgagaaaataaagagctatacggccgtggcggctaaggaagat
gcctttgaggcagccaaattcattgccaagaactcgggcatgattgaggagctgtatgcc
gataagagcattgaaggcctctcccgctacgagaacattcaggagctactgaacggtatc
aaggcctacaccgaggatgccgagcgcgaggataagtccctgggcgccttcctgcaggac
attgccctggtcacggattccgacctgaaagatgccaaggacgaaggcgaatccgtgacg
ctgatgacgattcactcggccaagggcctggagtttcgcaacgtatacatagtgggtatg
gaggaaaacctgttccccagccagatgatgattacctcgcgggccgacctggaggaagag
cgccgcctgttctacgtagccatcacgcgggccgagaaaaagctcaccctcagctacgcc
acctcccgctaccagtggggcaacctgcgcagctgcgaaaaaagccgctttctggatgaa
atcgacccacagtacgtggacttcaagttctccgccggtccggcaggctcgggctcgggc
gattcgcccttcggccacgttttcgagcgccgcagcaacctgattccgccggccccgcgc
aaaacagtggccaccaaatacgtagcgccttttgattttcagccttctgacaccagcaat
ctgcaaaccgggcagcgcgtggagcatcccaagtttggctttggcaaggtaacccagctg
gaaacgcaggccggctctaccaaagccattatccactttgaggaagtaggcgagaaaacg
ttattgctgagttttgcgaaattgcgggtgttaggctga
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integrated database retrieval system
