Hymenobacter sp. DG25B: PK28_09870
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Entry
PK28_09870 CDS
T03500
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
hyd
Hymenobacter sp. DG25B
Pathway
hyd03030
DNA replication
hyd03430
Mismatch repair
hyd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PK28_09870
03430 Mismatch repair
PK28_09870
03440 Homologous recombination
PK28_09870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyd03032
]
PK28_09870
03400 DNA repair and recombination proteins [BR:
hyd03400
]
PK28_09870
Enzymes [BR:
hyd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PK28_09870
DNA replication proteins [BR:
hyd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PK28_09870
DNA repair and recombination proteins [BR:
hyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PK28_09870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DEDDh_C
DNA_pol_A_exo1
DUF7508
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
AIZ63915
LinkDB
All DBs
Position
complement(2324431..2325912)
Genome browser
AA seq
493 aa
AA seq
DB search
MYAIIDLETTGGQPAQDRITEIAIFIHDGEKVVDQFDTLLNPGRPIPFFISQLTGITDDM
VRDAPKFHEVARKVVEMTEGCVFVAHNVRFDYSFMKKEFADLGFNYSRKTLCTVRLSRSL
IPGQPSYSLGKLCQNIGIPLNGRHRAAGDAAATAILFDRLLKITQQEEALTNPAISPADT
LAALDVTAPAGNRPATKQPSPRKVKAVQDAIKTALLPPNITPQKVASLPQEAGVYYFHNE
QGEVIYVGKSINIYKRIQQHFAVDYKSRKSIEFKNSISDITWELTGSELVALLYESHEIK
RMKPLYNRQQRRSVFPAGIFLRTDEQGYKHLYYGRADDHAESHPLIALGNQFKAKGFLFH
KVAKFNLCQKLCDLYKTQGSCFDYQVHRCKGACLGLEPPEEYNQRVEKAIESFTYEHGSF
VVMGQGRREGEKSLVVVENGRYLGFGYVDETFTARRLDDFKLAITRYNDNKDVQQIIRQY
LRTKHRDKVKVFR
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
ttgtacgctattatcgaccttgaaactaccggcggacagcctgcccaggaccggattacg
gaaatagccatcttcattcatgatggtgaaaaagtagtggatcagtttgataccctgctg
aatcccgggcggcctatccccttcttcatctcccaactcacgggcattaccgacgatatg
gtgcgggatgcgcccaagtttcatgaggtggcgcgcaaggtggtggaaatgacagaaggc
tgcgtgtttgtggcccacaacgtgcgctttgattactccttcatgaaaaaggagtttgcc
gatttaggctttaactactcgcgcaaaaccctgtgcactgtgcgcctgagccgctccctg
ataccggggcagcccagctatagcctgggcaagctgtgccagaacattggcattccgctc
aacggccgccaccgcgccgccggcgacgccgccgccaccgctattctcttcgaccggctg
ctgaaaattacccagcaggaagaagccctcaccaaccccgccatcagccccgctgatacc
ctggcggctctggatgttacggccccggccggcaaccgccccgccaccaagcagccctcg
ccccgcaaagtaaaggccgtgcaggatgccattaaaacggccctgctacctcccaacatc
accccgcaaaaggtggcctcgctgccccaggaagcgggcgtgtactacttccacaatgag
cagggcgaggtgatttatgtgggcaagagcatcaacatttataagcgcatacaacagcat
ttcgccgtcgattacaagtcgcgcaagagcattgaatttaaaaattcgatatcggacatc
acctgggagctgacgggctcagagctggtggcgctgctgtacgagtcgcacgaaatcaag
cgcatgaagcccctttacaaccgccagcagcggcgctcggtgtttccggcgggtattttc
ctgcgcaccgatgagcagggttataagcacctgtactacggccgcgccgatgaccacgcg
gaatcacacccgctgattgcgctgggcaaccagttcaaagccaaaggctttctatttcat
aaagtagccaagttcaacctttgccagaagctctgcgacctgtataaaacccagggctcc
tgctttgactaccaggtgcaccgctgcaagggtgcctgcctgggcctggagccgccggaa
gaatacaaccagcgcgtggagaaagccattgagtcgtttacctacgagcacggctctttt
gtggtgatgggtcagggccggcgcgagggcgagaaaagcctggtggtggtagagaatggg
cgctacctgggctttggctacgtggacgaaaccttcacggcccgccgcctcgatgatttt
aagctcgccatcacccgctacaacgataacaaggacgtgcagcagattatccggcaatat
ctgcgcaccaagcacagggataaagtgaaggtatttcgctaa
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