Hymenobacter sp. DG25B: PK28_09950
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Entry
PK28_09950 CDS
T03500
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hyd
Hymenobacter sp. DG25B
Pathway
hyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PK28_09950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyd03019
]
PK28_09950
03016 Transfer RNA biogenesis [BR:
hyd03016
]
PK28_09950
Enzymes [BR:
hyd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PK28_09950
Messenger RNA biogenesis [BR:
hyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PK28_09950
Transfer RNA biogenesis [BR:
hyd03016
]
Prokaryotic type
tRNA degradation factors
PK28_09950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
KH-I_KHDC4-BBP
S1_RRP5
KH_2
Motif
Other DBs
NCBI-ProteinID:
AIZ63926
UniProt:
A0A0A7LKP0
LinkDB
All DBs
Position
2342290..2344458
Genome browser
AA seq
722 aa
AA seq
DB search
MPNYNAVTKHITLPDGRQISIETGKLAKFADGAVVVRLGDAMLLATVVSQPSQREGVDFL
PLSVDYQEKFGGAGNIPGSFQRREGRLSDQEILVCRLVDRILRPMFPKDYHYEVQVMITL
ISADKTVQPDALAALAASAALSISDIPFAGPISEVRVARIDGKLQINPLTADIARADMDL
IVGATADSVAMVEGEMDEVSEEEMVEAIAYAHEAIKEQVRVQQELAAAVEKSHVKREYPK
YDENEDLKQRIHEGVYQHAYKIAQSGNTSKAGRKEAFGEVKKSLSEKILEDQPELDMKMF
GRYYSSAEKKAIRDMMIKERTRLDGRALTEIRPIWSEVNYLPGAHGSALFTRGETQSLTT
VALGTKLDEQIIDTAMTSGYSKFMLHYNFPAFSTGEVKPNRGPGRREIGHGNLAMRSLKK
VLPSDDENPYTIRIVSDILESNGSSSMATVCAGSMALMDAGIKVRAAVSGIAMGLVQDKE
TGEYAVLSDILGDEDHLGDMDFKVTGTEKGIVACQMDIKIQGLSSEIMTAALHQAREGRL
HILREMAKTISEPAAELKPHTPRSHKMLIDKEYIGAVIGPGGKVIQQIQKDTNATVIIEE
KDEKGHVSIYASNQEDMQAAIDRIRAIAATPEVGETYKGKVRSIQPYGAFVEIMPGKDGL
LHISEVAHERLATLEGVLEVGQEIDVKLLDIDKKTGKYRLSRKVLLPKPEKAAASNGEEQ
PS
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgcccaactacaacgcggttaccaaacacattaccctgcccgatggtcggcagatttcc
attgaaaccggcaagctggccaaattcgctgatggcgccgtagtggtgcgcctgggcgat
gccatgctgctggccacggttgtttcccagcccagccagcgcgaaggcgtggatttcctg
cccctgtcggtagactatcaggagaaattcggcggtgccggcaacattcccggctcattc
cagcgtcgcgaaggccgcctgtcggaccaggaaatcctggtttgccgccttgtagaccgc
atcctgcgccccatgttccccaaggactatcactacgaggtgcaggtgatgattacgctg
atttcagccgataaaaccgtgcagccggatgccctggctgccctggctgcttccgctgcc
ctgtcgatttccgatattcccttcgctggtccgatttcggaagtacgcgtagcccgtatc
gacggcaagctgcagatcaaccccctcaccgccgatattgcccgcgccgacatggacctg
attgtaggtgctaccgccgactcagtggccatggtggaaggtgaaatggacgaagtgagc
gaagaggaaatggtagaagccattgcctacgcccacgaagccattaaagagcaggtacgc
gtgcagcaggagctggccgccgccgtggagaaatcccacgtgaagcgcgagtatccgaag
tatgacgaaaacgaagacctgaagcagcgcattcacgaaggagtgtaccagcacgcctac
aaaatcgcgcagtcgggcaacaccagcaaagccggccgcaaggaggcttttggtgaggtg
aagaagtccttgagcgagaaaatccttgaggatcagccggagctggacatgaagatgttc
ggccgctactactcttcagcagagaagaaagccatccgcgacatgatgattaaggagcgc
acccgcctcgatggccgcgctctgaccgaaattcgccccatctggagcgaggtgaactac
ctgcccggtgcccacggctcggccctgttcacccgcggcgaaacccagtcgctgactacg
gtggccctcggcaccaagctcgatgagcaaatcatcgatacggccatgacttcgggttac
agcaagttcatgctgcactacaacttccccgctttctctacgggtgaagtaaagcctaac
cgcggccccggccgtcgggaaattggccacggcaacttggctatgcgctccttgaagaag
gttttgccttccgatgacgagaatccatataccatccgtatcgtgtcggacatcctggag
tcgaacggctcctcgtcgatggcgacggtatgcgcgggctctatggccctgatggacgcg
ggcattaaagtgcgcgcggccgtttcgggtattgccatgggcctggtgcaggacaaagaa
accggcgaatacgccgtgctttccgacatcctgggcgatgaggaccacctcggcgacatg
gactttaaagtaaccggcactgagaaaggtatcgtggcttgccagatggacatcaaaatc
cagggcctgagcagcgaaatcatgacggctgccttgcaccaggcccgcgaaggccgcctg
cacatcctgcgcgagatggccaagaccatttcggagcccgcggctgagctgaagcctcat
acgccccgctcgcacaagatgctcatcgataaagagtacatcggtgcggttatcggaccc
ggcggtaaagtcattcagcagatccagaaggataccaacgctacggttatcattgaggag
aaggacgagaaaggccacgtaagcatctacgcttccaaccaggaagacatgcaggcagct
attgaccggatccgggctattgcggccacgccggaagtgggtgagacctacaaaggcaaa
gttcgcagcatccaaccgtacggcgctttcgtagaaatcatgccgggtaaggatggtctg
ctgcacatttcggaagtggcccacgagcgtctggctacgctggaaggcgtactggaagta
gggcaggaaattgacgtgaaactgctcgatatcgacaagaagaccggtaagtaccgcttg
tcgcgcaaggtattgctgccaaagcctgagaaggccgctgccagcaatggggaggagcag
ccaagctag
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