Hymenobacter sp. DG25B: PK28_09955
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Entry
PK28_09955 CDS
T03500
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hyd
Hymenobacter sp. DG25B
Pathway
hyd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hyd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PK28_09955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyd03021
]
PK28_09955
Transcription machinery [BR:
hyd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PK28_09955
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r1_2
Sigma70_r4_2
UPF0122
TcdB_N
Scm3
DUF3364
Motif
Other DBs
NCBI-ProteinID:
AIZ63927
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All DBs
Position
2344556..2345419
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AA seq
287 aa
AA seq
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MRQLKISKQITNRESQSLDKYLQEIGKVDLLTPDEEVTLAQRIKEGDQQALEKLTKANLR
FVVSVAKQYQNQGLSLGDLINEGNLGLIKAAKRFDETRGFKFISYAVWWIRQSILQALAE
QSRIVRLPLNRVGSLNKISKSFSELEQKFEREPSPEEIAEVLELTTSEVVDTLKISGRHV
SVDAPFVQGEENRLLDVLENEDEESPDMGLMNDSLRKEVQRALSTLTKREADVITLYFGL
NGEHSLTLEEIGEKFNLTRERVRQIKEKAIRRLRHTSRSKALKPYLG
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgagacagttaaaaatcagcaagcagataaccaaccgcgaaagccagtcgctggataaa
tacctccaggagattggtaaagtggatctgctcactcccgatgaggaggtgacgctggcg
caacgcattaaagaaggcgaccagcaagcgctggaaaagctgaccaaggccaacctccgt
ttcgtggtgtcggtggccaagcaataccagaaccagggtctttcgctgggcgacctgatc
aacgagggcaacctcggtctgatcaaagccgctaagcgtttcgatgaaacccgtggcttt
aagtttatctcctacgccgtatggtggattcgtcagtcgattctgcaggctttggccgag
cagtcgcgcattgtgcgtctgccgctgaaccgcgtaggctcgctgaataaaatcagcaaa
tccttctccgagctggagcagaaatttgagcgggagccctcgcccgaagaaattgccgaa
gttctggagctgacgacctccgaggtagtggataccctgaaaatctcgggccgccacgta
tccgtggatgccccgtttgtgcagggtgaagaaaaccgcctgctggacgtgctcgagaac
gaggacgaggaaagcccggacatgggcctcatgaacgactcgctccgcaaggaggtgcag
cgcgccctgagcacgctcaccaagcgcgaagccgacgttatcacgctgtatttcggcctg
aatggggagcattccctcacgctggaagaaattggcgagaagttcaacctcacccgggag
cgggttcgtcagatcaaggaaaaagctattcgccgcctgcgccatacctcgcgcagcaaa
gccctaaagccttacctcgggtaa
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