Hydrogenophaga sp. ANAO-22: ABSY19_22760
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Entry
ABSY19_22760 CDS
T10785
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hyda Hydrogenophaga sp. ANAO-22
Pathway
hyda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABSY19_22760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyda03019
]
ABSY19_22760
Enzymes [BR:
hyda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABSY19_22760
Messenger RNA biogenesis [BR:
hyda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABSY19_22760
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
DUF621
CMS1
Motif
Other DBs
NCBI-ProteinID:
XHM84471
LinkDB
All DBs
Position
complement(4705084..4706868)
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AA seq
594 aa
AA seq
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MTFDDLNLAPAIVQAVREHGYETPTPIQVEAIPAVLAGRDLLGGAQTGTGKTAAFTLPLL
QRLSGSERAKSRFGGVGIRALVLTPTRELAAQVEESVRVYGKHLSLTSTVVFGGVGMNPQ
INAMKRGVDILVATPGRLLDLQQQGFLDLSTVQMLVLDEADRMLDMGFIHDVKKILALVP
KEKQSLLFSATFSDEIRDLASALLKDPLHIQVTPRNTTVQRITQVIHPVGRGKKKALLVH
IINQHNWSQVLVFTRTKFGANNVAEYLTKNGIHAMALHGNKSQGARTQALAGFKSGEIRA
LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGEAVNLVSLDEEGFMM
EIERFTKQQIPVQIFPEFMPEPGEKAEPIAMGRQTIWGGAGKPPSREVMAAAAKAARTEM
LQRVREKKASEPQGRGNGGGGQRQRPAGDGSQADGPRGEGRRGNGGGGQRANGNGGGGNG
QRQGQRHGGGQQGQRPPREDRGFREDRGPREDREPGAERQPGPNAHLGSLRIKEPRPRAA
NPGGQPDPLRTSIDAMRTGNRGGGRGKGGGGGGGQRGNAGGPADPLRTSYGRIR
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgacctttgacgatctgaacctggccccggccatcgtgcaagccgtgcgcgagcacggt
tacgaaacccccacgcccatccaggtggaagccatccccgccgtgctggccggccgcgac
ctgctcggtggcgcccagacgggcaccggcaagaccgccgccttcaccctcccgctgctg
caacgcctctccggcagcgagcgcgccaagagccgtttcggcggcgtgggcatccgtgcc
ctggtgctcacccccacccgcgaactcgccgcccaggtcgaagagtcggtgcgcgtgtac
ggcaaacacctttcgctgacctccaccgtcgtcttcggcggcgtcggcatgaacccgcag
atcaacgccatgaagcgcggcgtcgacatcctggtggccacccccggccgcctgctcgac
ctgcagcagcaaggcttcctcgacctctccaccgtgcagatgctggtgctggacgaagcc
gaccgcatgctcgacatgggtttcatccacgacgtgaagaagatcctcgcgctggtgccc
aaggaaaagcagagcctgctgttctcggccaccttcagcgacgagatccgcgacctcgcc
agcgccctgctcaaggacccgctgcacatccaggtgacgccccgcaacaccacggtgcag
cgcatcacgcaggtgatccaccccgtgggccgcggcaagaagaaggcgctgctggtgcac
atcatcaaccagcacaactggagccaggtgctggtgttcacgcgcaccaagttcggtgcc
aacaacgtcgccgagtacctcaccaagaacggcatccacgcgatggcgctccacggcaac
aagagccagggtgcccgcacccaggcgctggccggcttcaagagcggtgagatccgcgcc
ctggtcgcgaccgacatcgccgcgcgcggcatcgacatcgacgagctgccgcacgtcgtg
aactacgagatccccaacgtcagcgaagactacgtgcaccgcatcggccgcaccggccgc
gcgggcaacagcggcgaagccgtgaacctcgtgagcctggacgaagaaggcttcatgatg
gagatcgagcgcttcaccaagcagcagatcccggtgcagatcttccccgagttcatgccc
gagccaggcgagaaggccgagcccatcgccatgggccgccagaccatctggggtggcgcg
ggcaagccgcccagccgcgaggtgatggcggccgccgccaaggccgcgcgcaccgagatg
ctgcagcgcgtgcgcgagaagaaggccagcgagccgcaaggccgtggcaacggcggtggc
ggtcagcgccagcgccccgcgggtgatggcagccaggccgacggcccgcgcggcgaaggc
cgtcgcggcaacggtggcggcggtcaacgcgccaacggcaatggcggcggtggcaatggc
cagcgccagggccagcgccacggtggtggccagcagggccagcgcccgccgcgcgaagac
cgcggcttccgtgaagaccgcggcccgcgcgaggaccgcgagcccggtgccgagcgccag
cccggccccaacgcccacctgggcagcctgcgcatcaaggaaccccgtccgcgcgcggcc
aacccgggcggccagcccgatccgctgcgcaccagcatcgacgcgatgcgcaccggcaac
cgcggtggtggcaggggcaagggcggtggcggcggtggtggtcagcgcggcaacgcgggt
ggcccggccgacccgctgcgcaccagctacggtcgcatccgctga
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