Hydrogenophaga sp. ANAO-22: ABSY19_23820
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Entry
ABSY19_23820 CDS
T10785
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
hyda Hydrogenophaga sp. ANAO-22
Pathway
hyda02020
Two-component system
hyda02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hyda00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ABSY19_23820 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ABSY19_23820 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyda03021
]
ABSY19_23820 (rpoN)
Transcription machinery [BR:
hyda03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABSY19_23820 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
LacI
HTH_23
HTH_3
HTH_38
HTH_21
Motif
Other DBs
NCBI-ProteinID:
XHM80828
LinkDB
All DBs
Position
4909814..4911304
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AA seq
496 aa
AA seq
DB search
MIQMDARADQRQSQTLSPRLQHAVRLLQMSSLDFGIVVRDVLGRNPFLEAEEGDGEDESE
GLRDGDIDSRSGEAAGEVYDGPRETDLAAPAQAEIDRSTASDSDLWLADGLTPARQGHDG
DVSALDFMMEETPLNAHLHGQLGTMALSPRDLALAGVVVESLDDDGYLRTPLNELREVAD
VVPAATLEDLQIALKLVQSLEPAGVAARDVAECLSLQLGEIECPHVRAMARAIVNDHMDS
LAARDVPTLARALDASVGEVEAVCDRIRHLDPRPGWRLSSSRVNYIVPDVIVKKDRGAWN
VRLNAAVVPKVRINEVYAQLFQRHRCAENAEMGAHLQEARWTLRNVEQRFSTILDVSQAI
VRRQRHFFEYGSMAMKPLGLREIADEVGIHESTVSRVTNNKYMATPTGVYELKHFFSRAM
VSANGKACSGTAIRGLIQDIIEAESTDRPLSDAEITRQLARQGLTVARRTVTKYRQMLRI
EAVGRRKRHDGLAVSA
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgatccagatggacgcccgcgccgaccagcgccagagccagaccctgtctccccgtttg
cagcatgccgtgcgcctgctgcagatgtcctcgctggatttcggcatcgtggtgcgcgac
gtgctggggcgcaatccgttcctggaagcggaagagggcgatggcgaggacgagagcgaa
ggcctgcgggacggtgacatcgacagccgatcgggcgaagcggccggcgaggtgtacgac
ggaccgcgcgagaccgatctggcggcgccggcgcaggccgagatcgaccggtccaccgcg
tccgacagcgacctgtggctcgccgatggcctgaccccggcgcgccagggacacgacggg
gatgtgtccgcgctcgatttcatgatggaggaaaccccgctcaatgcccacctgcacggg
cagctcggcaccatggccctgtcgccgcgcgacctcgcgctggccggtgtggtggtcgag
tcgctcgacgacgacggttacctgcgcacgcccctgaacgaactgcgcgaggtggcggac
gtggtgcccgcagcgacgctggaagacctgcagatcgcgctcaagctggtgcagtcgctg
gagccggccggtgtggccgcgcgcgatgtggcggaatgcctcagcctgcagctgggcgag
atcgaatgcccccacgtgcgcgcgatggcgcgcgccatcgtcaacgaccacatggacagc
ctggcggcgcgcgatgtgccgaccctggcgcgggcgctggacgcctcggtgggcgaggtc
gaggcggtgtgtgaccgcatccgccacctcgacccgcgaccgggctggcgcctgagttct
tcccgggtgaactacatcgtgcccgacgtgatcgtgaagaaggaccggggcgcgtggaac
gtgcggctcaacgccgcggtcgtgcccaaggtgcgcatcaacgaggtgtacgcccagctg
ttccagcgccaccgctgcgccgagaacgccgagatgggcgcgcacctgcaggaggcgcgc
tggacgctgcgcaacgtcgagcagcgcttctcgaccatcctcgacgtgtcgcaggccatc
gtgcggcgccagcgccatttcttcgagtacggcagcatggcgatgaagccgctgggcctg
cgcgagatcgccgacgaggtcggcatccacgaatccacggtctcgcgcgtcaccaacaac
aagtacatggccacgcccaccggcgtgtacgagctcaagcacttcttctcgcgcgcgatg
gtgagcgccaatggcaaggcctgctcgggcaccgcgatccggggcttgatccaggacatc
atcgaagcggagtcgaccgatcggccgctgtcggacgccgagatcacgcgccagctcgcc
cggcagggcctgacggtggcgcggcgcaccgtcaccaagtaccgtcagatgctgcgcatt
gaggccgtgggccggcgcaagcgccacgacggcctggccgtctcggcctga
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