Hydrogenophaga sp. SNF1: SOM08_00015
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Entry
SOM08_00015 CDS
T10669
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
hydr Hydrogenophaga sp. SNF1
Brite
Enzymes [BR:
hydr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
SOM08_00015 (gyrB)
DNA replication proteins [BR:
hydr03032
]
Prokaryotic type
DNA Topoisomerases
SOM08_00015 (gyrB)
DNA repair and recombination proteins [BR:
hydr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SOM08_00015 (gyrB)
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Ortholog
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Gene cluster
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Other DBs
NCBI-ProteinID:
WQB83732
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Position
2714..5299
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AA seq
861 aa
AA seq
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MSDESTSPESSNFQPKIDPNQAGASEGYGEGSIQILEGLEAVRKRPGMYIGDTSDGTGLH
HLVFEVVDNSIDEALAGHCDDIVVTIHTDNSISVVDNGRGIPTGVKMDDKHEPKRSAAEI
ALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRREGKVHQLEFARGFVQNR
ILEDQSGVEISPMKVTGATEKRGTEVHFLPDTEIFKENNDFHYEILSKRLRELSFLNNGV
RIRLHDERSGKEDDFSGAGGVKGFVEFINKGKTVLHPNIFHATGDRQSDQGTNIGVEVAM
QWNSGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENELAKKAKVEVSGDDMR
EGLCCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEDVVARLLTDYLQERPNDAKIICGKII
EAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGR
DRKFQAILPLRGKILNVEKARYEKLLSSNEILTLITALGTGIGKAGSAGDGKSGADDFDV
AKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKSGKEELY
LKDAAALDGFLLRIALKDAKVMTGGASNATLEGATLEELARKHQVAEHVIARLSAFMDAE
ALRAVADGVALGLDDMEAASASAQDLQTKLRELSTTGVPATVTAEFDQRTDKPVLRISRR
HHGNIKSSVITQDFVHGADYAALAEAANTFRGLLGDGAKVMRGEGDKQKEERVSDFRTAM
QWLISEAERTTARQRYKGLGEMNPEQLWETTMDPEVRRLLRVQIDDAIEADRVFTMLMGD
EVEPRRDFIETNALRAGNIDV
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgagtccacgagccccgaaagctccaatttccagcccaagatcgatccgaac
caggccggggcgagtgaggggtacggcgagggctcgatccagatcctcgaaggcctggaa
gcggttcgcaagcgcccgggcatgtacatcggcgacacctccgacggcaccggcctgcac
cacctggtgttcgaggtggtcgacaactccatcgacgaagcgctcgccggccactgcgac
gacatcgtcgtcaccatccacaccgacaactccatcagcgtggtcgacaacggccgcggc
atccccaccggggtgaagatggacgacaagcacgagcccaagcgcagcgcggccgagatc
gcgctgaccgaactgcacgccggcggcaagttcaaccagaacagctacaaggtctcgggc
ggcctgcacggcgtgggcgtgagctgcgtgaacgcgctcagcaagtggctgcgcctgacg
gtgcgccgcgaaggcaaggtgcaccaactggagttcgcgcgcggcttcgtgcagaaccgc
atcctggaagaccagagcggcgtcgagatctcgcccatgaaggtgaccggcgccaccgag
aagcgcggcaccgaggtgcacttcctgcccgacaccgagatcttcaaagagaacaacgac
ttccactacgagatcctgagcaagcgcctgcgcgagctcagcttcctcaacaacggcgtg
cgcatccgcctgcacgacgagcgcagcggcaaggaagacgacttctccggtgcgggcggc
gtgaagggcttcgtcgagttcatcaacaagggcaagaccgtcctgcacccgaacatcttc
catgccacgggcgaccgtcagagcgaccagggcaccaacatcggtgtcgaggtggccatg
cagtggaacagcggctacaacgagcaggtgctctgcttcaccaacaacatcccgcagcgc
gacggcggcacccacctcaccggcctgcgcgcggccatgacgcgcgtcatcaacaagtac
atcgaagaaaacgagctggccaagaaagccaaggtagaggtcagcggtgacgacatgcgc
gaaggcctgtgctgcgtgctcagcgtgaaggtgcccgagcccaagttcagcagccagacc
aaggacaagctggtctccagcgaggtgcgcggcccggtggaagacgtggtggcgcgcctg
ctgaccgactacctgcaggagcggcccaacgacgccaagatcatctgcggcaagatcatc
gaggccgcgcgggcgcgcgaagccgcgcgcaaggcgcgcgagatgacgcgccgcaagggc
gtgctcgacggcatgggcctgcccggcaagctcgccgactgccaggagaaggacccggcg
ctgtgcgagatctacatcgtggagggcgactccgccggcggctcggccaagcaaggccgc
gaccgcaagttccaggcgatcctgccgctgcgcggcaagatcctcaacgtggagaaggcg
cgctacgagaagctgctgagctccaacgagatcctcacgctcatcaccgcgctgggcacg
ggcatcggcaaggccggcagcgcgggcgatggcaagagcggcgccgacgactttgatgtg
gccaagctgcgctaccaccgcatcatcatcatgaccgacgccgacgtggacggcgcccac
atccgcacgctgctgctgaccttcttctaccgccagatgcccgagctggtggagcgcggc
cacatctacatcgcgcagccgccgctgtacaaggtcaagagcggcaaggaagagctgtac
ctcaaagacgccgccgcgctcgacggctttctgctgcgcatcgcgctgaaagacgccaag
gtgatgaccggtggcgcgtccaacgccaccctcgaaggcgccacgctcgaagagctcgct
cgcaagcaccaggtggccgaacacgtgatcgcgcgcctgtcggccttcatggacgccgag
gcgctgcgcgccgtggccgacggcgtggcccttgggctggacgacatggaggccgcgtcc
gccagcgcgcaggacctgcagaccaagctgcgcgaactcagcaccaccggcgtgcccgcc
accgtgacggccgagttcgaccagcgcaccgacaagccggtgctgcgcatcagccgccgc
caccacggcaacatcaagagcagcgtcatcacgcaggacttcgtgcacggcgccgactac
gccgccctggccgaggccgccaacaccttccgtggcctgctgggcgacggcgccaaggtc
atgcgcggcgagggcgacaagcagaaggaagagcgcgtgagcgacttccgcaccgccatg
caatggctcatcagcgaagccgagcgcaccaccgcgcgccagcgctacaagggcctgggc
gagatgaaccccgagcagctctgggagaccaccatggaccccgaggtgcgccgcctgctg
cgcgtgcagatcgacgacgcgatcgaggcggaccgcgtgttcaccatgctgatgggcgat
gaggtggagccgcggcgcgacttcatcgagaccaacgcgctgcgggcggggaacatcgac
gtttga
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