KEGG   Hydrogenophaga sp. SNF1: SOM08_00245
Entry
SOM08_00245       CDS       T10669                                 
Name
(GenBank) HsdR family type I site-specific deoxyribonuclease
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
hydr  Hydrogenophaga sp. SNF1
Brite
KEGG Orthology (KO) [BR:hydr00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:hydr02048]
    SOM08_00245
Enzymes [BR:hydr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     SOM08_00245
Prokaryotic defense system [BR:hydr02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   SOM08_00245
SSDB
Motif
Pfam: SWI2_SNF2 HSDR_N ResIII T1R_D3-like DEAD SNF2-rel_dom
Other DBs
NCBI-ProteinID: WQB83778
LinkDB
Position
51406..54528
AA seq 1040 aa
MNAALRWLASLGWRHRPAAEAARWRSGPNDVLLRPRLIQALQAHRFEYRGERYPLSAGGI
DQVVREVEGLSLADGLLAANERFYRLLTLGVTVTEFMPDGKKHQPTVPLVDWEAPDTNQW
DAIESPELHTTIGAHPRRPGVLGYVNGLPLVVIEGPASGGHPRAAPVHEAIQRQLHHQRP
DETPGLFVYAQLLLALGSGEARYATTGTPPRAWARWREEPGDGTGSNEPERTVRALLRPE
RLLELLRHFVLFDRRLGKVIARPHQYFGVRAMLQRIQQRRPDGARQGGVLWHTTGSGKSL
TMVFLARALVFHPDTQACRVLVVTDRLDLEDQLARNFTNGGAFGSAVAAKKDGEKARVGS
GRELARRIGRGSERIVFTLVHKFTTATQRPECYNPSADIVALVDEGHRSHGGQLHERLRR
VLPRAACLAFTGTPLLKEEKTSQRFGPIVHAYSLQRAVDDGTVVPLLYEERVPEMGVDDD
AANHWFNRISAGLTPEQTAELKGRYTSRRAVYGAPQRIELIAWDIAQHFERHVKRLGLKG
QVATASKLDAIRYHRCLEATGLVSSAVIMSPPDNGEGHDAIDDQGRLEVQRWWDAHVGRD
AQAHEHRVLRDFSGDGGPELLIVVDRLLTGFDEPRNAVLYIDKPLKAHNLIQAVARVNRP
HEAKRHGLLVDYRGILRELDSALRDYQNLEARTQGGYELDDVAGLYRPVSAEYRQLPALH
AALRALFDEVRDPSDLEQYRQALMPRFVDSGSGQGLDAQQQRRDAFYAALRRFTQCLQTA
EASRSFFDDPQVSEQAIATYRAERRFFNGLRRIAQGDAQETEDRSDSGPEHLRHAAGPRW
QRLAVREPEGAYLLTPPARTDAPERWSPEKARNEADLVRARLRKTIQVALADDPYAQTVF
ADRLKQAVAQTQALFDQPLKQYMLLVRLEDQVAARTVDGLPDALAAHPLARAYCGICRLV
LGEEAFARTPPDAWARQALSIDAVVGRAMVEHSLNPHNIGFVIRQALLPELFALMGLEHA
REVIERVVEVARVRMERACR
NT seq 3123 nt   +upstreamnt  +downstreamnt
atgaacgccgcgctgcgctggctggcgagcctgggctggcgccaccggcccgctgccgag
gcggcgcgctggcgcagcggtccgaacgacgtccttctgcggccacgcctgatccaggcc
ctgcaggcgcaccgcttcgagtaccggggggagcgctacccgctctcggccggtggcatc
gaccaggtggtgcgcgaggtggaggggctgtccctggccgacggcctgctcgccgccaac
gagcggttctaccgcctgctcacgctcggtgtcacggtcaccgagttcatgcccgatggc
aagaagcaccagcccacggtgccgctggtcgactgggaagcccccgacaccaaccaatgg
gacgcgatcgaatcgcccgaactgcacaccaccatcggcgcgcacccgcgccgacccggc
gtgctgggctacgtgaacggcctgccgctggtggtcatcgagggcccggcatcgggcggc
cacccccgcgcggctccggtgcacgaggccatccagcgccagctgcaccaccagcggccc
gacgagacaccggggctgttcgtctacgcccagttgctgctggccctgggttcgggcgag
gcgcgctacgccaccacgggcacgcccccgcgcgcctgggcgcgctggcgcgaggagccc
ggcgacggcactgggtccaacgagcccgagcggacggtgcgcgccctgctgcggcccgag
cggctgctcgagctgctgcgccacttcgtcctgttcgaccgccgcctgggcaaggtgatc
gcgcggccacaccagtacttcggcgtgcgggccatgctccagcgcattcagcagcgccgc
cccgacggcgctcgccagggcggtgtgctctggcacaccacgggctcgggcaagagcttg
accatggtcttcctggccagggccctggtgttccaccccgacacgcaggcctgccgcgtg
ctcgtcgtcaccgaccgcctcgacctcgaagaccagctcgcgcgcaatttcacgaacggc
ggcgccttcggctcggccgtggccgcgaagaaggatggcgagaaggcccgcgtgggcagc
gggcgcgagctggcgcggcgcatcggccgggggagcgagcgcatcgtgttcacgctggtc
cacaagttcaccaccgccacgcaacggcctgagtgctacaacccttcggccgacatcgtg
gcgctggtcgacgagggccatcgcagccatggcgggcaactgcatgagcgcctgcgccgg
gtgctgccacgcgcggcctgcctggccttcacgggcacccccctgctcaaggaggaaaag
acctcgcaacgcttcggacccatcgtgcacgcctacagcttgcagcgcgcggtggacgac
ggcaccgtggtgcccctgctgtacgaagagcgcgtgcccgagatgggcgtcgacgacgac
gccgccaaccattggttcaaccggatcagcgccggcctcacgcccgaacagaccgcggag
ctcaagggccgctacacgagccggcgcgcggtatacggcgccccccaacgcatcgagctc
atcgcctgggacatcgcccagcacttcgagcggcacgtcaagcgcctgggtctcaaaggc
caggtggccacggcgagcaagctcgacgcgatccgctaccaccgctgccttgaggccacg
ggcctggtgagcagcgccgtgatcatgtcgccgcccgacaacggcgagggccacgacgcc
atcgacgaccagggccggctcgaggtgcagcgctggtgggacgcccatgtgggccgcgac
gcacaggctcacgagcaccgcgtgctgcgcgatttcagtggcgacggcgggcctgagctg
ctgatcgttgtcgaccggctgctcaccggcttcgacgaaccacgcaatgccgtgctgtac
atcgacaagccactgaaggcgcacaacctgatccaggccgtggcgcgcgtcaaccgcccg
cacgaagccaagcgccacggcctgctggtggactaccgcggcatcctgcgcgaactggac
agcgccttgcgcgactaccagaacctggaagcgcgcacccaggggggctacgagctcgac
gacgtcgcgggcctctatcgaccggtgagcgccgagtaccgccagctgccggccctgcac
gcggccctgcgcgccctgttcgacgaggtgcgggacccgtccgacctggagcagtaccgg
caggccctgatgccccgcttcgtggacagcggcagcgggcagggcctcgacgcgcaacaa
cagcgccgcgacgccttctacgccgccctgcggcgtttcacgcagtgcctgcagacggcc
gaggcctcgcgcagcttcttcgacgacccccaggtgtccgaacaggccatcgccacctac
cgcgccgaacggcgctttttcaacggcctgcgccgcatcgcgcaaggcgacgcccaggag
accgaggaccggagcgacagcgggcccgagcacctgcgccacgccgcgggtccgcgctgg
cagcggctggcggtgcgggaaccggagggcgcgtacctgttgacccctccggcacggacc
gacgcccccgagcgctggagcccggagaaggcccgcaacgaagccgacctggtgcgcgcg
cgcctgcgaaagaccatccaggtggcgctggccgacgacccctacgcgcaaacggtgttc
gccgatcggctgaaacaggccgtcgcccagacgcaggccttgttcgatcagccgctcaag
cagtacatgctgctggtgcgcctggaagaccaggtcgcggcgcgaacggtggacggcctg
cccgacgccttggcggcccatccgctggcgcgggcctattgcggcatctgccgcctggtg
ctgggcgaagaggcgttcgcgcgcacgccacccgacgcctgggcgaggcaagccctgtcc
atcgacgcggtggtgggccgggccatggtcgagcactcgctcaacccgcacaacatcggc
ttcgtcattcgtcaggccttgctgcccgagctgttcgcgctcatggggctggagcacgcg
cgggaggtgattgaacgggtggtggaggtggcgcgggtgaggatggagcgggcctgccga
tga

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