Hydrogenophaga sp. SNF1: SOM08_01405
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Entry
SOM08_01405 CDS
T10669
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
hydr Hydrogenophaga sp. SNF1
Pathway
hydr00521
Streptomycin biosynthesis
hydr00523
Polyketide sugar unit biosynthesis
hydr00525
Acarbose and validamycin biosynthesis
hydr00541
Biosynthesis of various nucleotide sugars
hydr01055
Biosynthesis of vancomycin group antibiotics
hydr01100
Metabolic pathways
hydr01110
Biosynthesis of secondary metabolites
hydr01250
Biosynthesis of nucleotide sugars
Module
hydr_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
hydr00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
SOM08_01405 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
SOM08_01405 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
SOM08_01405 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
SOM08_01405 (rfbB)
00525 Acarbose and validamycin biosynthesis
SOM08_01405 (rfbB)
Enzymes [BR:
hydr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
SOM08_01405 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
3Beta_HSD
adh_short
Motif
Other DBs
NCBI-ProteinID:
WQB84000
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Position
complement(291466..292530)
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AA seq
354 aa
AA seq
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MILVTGGAGFIGSNFVLDWLAHRDEPVLNLDKLTYAGNRRNLASLDGDARHVFVRGDIGD
AALVARLLAEHRPRAVINFAAESHVDRSIHGAEDFVQTNVVGTFRLLEAVRAHWLARPEA
ERAAFRFLHVSTDEVYGSLAPEAPAFTERHPYEPNSPYSASKAASDHLVRAWHHTHGLPV
LTTNCSNNYGPFHFPEKLIPLMIVNALAGKPLPVYGDGLQVRDWLYVGDHCSAIRRVLEA
GRVGETYNVGGWNEQTNIAIVKTICALLDQLRPRADGQCYATQITHVKDRPGHDRRYAID
ARKIESELGWRPAETFDSGIRKTVRWFLDHPEWVAEVQSGAYRDWVQAQYQGAA
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgatcctggtcaccggcggcgccggcttcatcggcagcaacttcgtcctggactggctc
gcacaccgcgacgagccggtgctcaacctcgacaagctcacctacgctggcaaccggcgc
aacctcgccagcctcgatggcgatgcgcgccacgtattcgtgcgcggcgacatcggcgat
gcggccctggtggcgcgcctgctggccgagcaccggccgcgcgcggtcatcaacttcgcg
gccgaaagccacgtggaccgctccatccacggcgccgaggacttcgtccagaccaacgtg
gtgggcaccttccggctgctcgaggccgtgcgcgcgcactggctcgcgcggcccgaggcc
gagcgcgcggccttccgcttcctgcacgtgagcaccgacgaggtctacggcagcctggcg
cccgaggcccccgccttcaccgagcgccacccctacgaacccaacagcccctacagcgcc
agcaaggccgccagcgaccacctggtgcgcgcctggcaccacacgcacggcctgccggtg
ctcaccaccaactgcagcaacaactacggcccgttccatttccccgagaagctgatcccg
ctgatgatcgtcaatgccctggcgggcaagccgctgcctgtgtacggcgacggcctgcag
gtgcgcgactggctctacgtcggcgaccactgcagcgccatccgccgcgtgctcgaggcc
ggccgcgtgggtgagacctacaacgtgggcggctggaacgagcagaccaacatcgccatc
gtgaagaccatctgcgccctgctcgaccagctgcgtccgcgcgcggacgggcagtgctac
gccacgcagatcacccacgtgaaagaccgccccggccacgaccggcgctacgccatcgac
gcgcgcaagatcgaatccgaactgggctggcgcccggccgagaccttcgacagcggcatc
cgcaagaccgtgcgctggttcctggaccaccccgaatgggtggccgaggtgcagagcggc
gcctaccgcgactgggtgcaggcgcagtaccagggggccgcgtga
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