Hydrogenophaga sp. SNF1: SOM08_01830
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Entry
SOM08_01830 CDS
T10669
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hydr Hydrogenophaga sp. SNF1
Pathway
hydr03020
RNA polymerase
Brite
Enzymes [BR:
hydr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SOM08_01830 (rpoC)
Transcription machinery [BR:
hydr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SOM08_01830 (rpoC)
DNA repair and recombination proteins [BR:
hydr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SOM08_01830 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WQB84080
LinkDB
All DBs
Position
369841..374052
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AA seq
1403 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIRIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFGIMSEDDFDAKRKEYGDEFVAKM
GAEGIKELLENIDLDIEIEKLRNDLTGSELKIKKNAKRLKVLEAFKRSGIKPEWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLKRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVEAGTPVVWDILEEVIKEHPVL
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQLEART
LMLASNNVLFPANGEPSIVPSQDVVLGLYYATREKINGKGEGMIFADLPELQRALDNGVV
ELTARVSVRLVEWTKDKTSGEFVAGLKLVDTTVGRALLSEILPKGLPFSVLDKPLKKKEI
SRLINASFRKCGLKETVVFADKLLQNGFRLATRAGISIAVDDMLVPKEKSGIIERAESEV
KEIAQQYASGLVTAGERYNKVVDIWGKAGDEISKVMMAQLAKQKTTDRSGKEVDQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTHQDCGTSNGTLMRAIVEGGEVIESLRDRILG
RTTAEEVIHPETRQQLVPAGEMLDEDTLDLLEAAGVDEVKVRTALTCETRYGLCAKCYGR
DLGRGGLANIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSSGVIGFN
ATMRYVTNSKGELVVIARSGEIIIQDEHGRERERHKVPYGAILAIKPDQQIKAGTILANW
DPLTRPIITEFAGTVKFENVEEGLTVAKQVDDVTGLSTLVVIDPKRRGATKVVRPQVKLI
DASGSEVKIPGTDHAVTIGFQVGALIQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDAGILAEMTGTVSFGKETKGKIRLQITDPEGKVWEELIPKEKNILVHEGQ
VVNKGESIVDGPADPQDILRLLGMEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVENPGDSSYIGGEQVERSEILNTNDALRADGKIPATYSNVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHEARKVKEKMDDEERRA
IAEADALSLAADQADAAAGESAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccttgctcgacctgttcaagcagttcacgcccgacgagcatttcgatgccatc
cgcatcggcctggcctcgccggaaaaaatccgctcctggtccttcggtgaagtcaagaag
cccgagaccatcaactaccgcaccttcaagcccgaacgcgacggcctgttctgcgccaag
atcttcggtcccatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgtcgaagtgacccagaccaaggtgcgccgcgag
cgcatgggccacatcgacctggccgcgccctgcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcctgggcctggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaggcctacgtggtgaccgaccccggcatgaccccgctgaagaagttcggcatcatg
tccgaggacgatttcgacgccaagcgcaaggagtacggtgacgagttcgtcgccaagatg
ggcgccgagggcatcaaggagctgctggagaacatcgacctcgacatcgagatcgagaag
ctgcgcaacgacctgaccggctcggaactgaagatcaagaagaacgccaagcgcctgaag
gtgctcgaggccttcaagcgctcgggcatcaaacccgagtggatggtgctcgacgtgctg
cccgtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttcgcgacc
tccgacctcaacgacctgtaccgccgcgtcatcaaccgcaacagccgcttgaagcgcctg
ctcgaactcaaggcgcccgagatcatcgcgcgcaacgagaagcgcatgctgcaggaagcc
gtggacagcctgctggacaacggccgccgcggcaaggccatgacgggcgccaacaagcgc
gcgctcaagtccctggccgacatgatcaagggcaagagcggccgcttccgccagaacctg
ctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggcccgacgctcaag
ctgcaccagtgcggcctgcccaagctgatggcgctggagctgttcaagcccttcatcttc
tcgcgcctggaagccatgggcatcgcgaccaccatcaaggccgcgaagaaggaagtggaa
gccggcacccccgtggtgtgggacatcctcgaagaggtcatcaaggagcacccggttctg
ctgaaccgcgcgcccacgctgcaccgcctgggcatccaggccttcgagcccatcctgatc
gagggcaaggcgatccagctgcacccgctggtctgcgccgccttcaacgccgacttcgac
ggtgaccagatggccgttcacgtgccgctgtccgtggaagcgcagctcgaagcccgcacc
ctgatgctggcctccaacaacgtgctgttcccggccaacggcgagccctccatcgtgccc
tcgcaggacgtggtgctgggcctgtactacgccacgcgcgagaagatcaacggcaagggc
gaaggcatgatcttcgcggacctgcccgagctgcagcgcgcgctggacaacggcgtggtg
gaactcaccgcgcgcgtgagcgtgcgcctggtcgagtggaccaaggacaagaccagcggc
gaattcgtcgcgggcctcaagctggtcgacaccaccgtgggccgcgcgctgctgtccgag
atcctgccgaagggcctgcccttctcggtgctggacaagccgctcaagaagaaggaaatc
tcgcgcctcatcaacgcgagcttccgcaaatgcggcctgaaggagaccgtggtcttcgcc
gacaagctgctgcagaacggcttccgcctggccacgcgcgcgggcatctcgatcgccgtc
gacgacatgctggtgcccaaggagaagagcggcatcatcgagcgcgccgagtccgaggtg
aaggaaatcgcccagcagtacgcctccggtctggtgaccgccggcgagcgctacaacaag
gtggtcgacatctggggcaaggccggtgacgagatctccaaggtcatgatggcccagctg
gccaagcagaagaccacggaccgcagcggcaaggaagtggaccaggagtcgttcaactcc
atctacatgatggccgactcgggcgcccgcggttccgcggcgcagatccgccagctggcc
ggcatgcgcggcctgatggccaagcccgacggctccatcatcgagacccccatcacggcg
aacttccgtgaaggcctcaacgtgctgcagtacttcatctccacgcacggcgcccgcaag
ggcctggccgacacggcgctgaagaccgcgaactcgggctacctgacgcgccgcctggtg
gacgtgacgcaagacctggtggtcacccaccaggactgcggcacctccaacggcacgctg
atgcgcgccatcgtcgagggcggtgaggtcatcgagtcgctgcgcgaccgtatcctgggc
cgcaccacggccgaggaagtgatccaccccgagacgcgccagcagctcgtgcccgcgggc
gaaatgctcgacgaggacaccctcgacctgctcgaggccgccggcgtcgacgaggtcaag
gtgcgcaccgcgctcacctgcgagacccgctacggcctgtgcgccaagtgctacggccgc
gacctcggccgcggtggcctggccaacatcggcgaggcggtgggcgtgatcgccgcgcag
tcgatcggcgagcccggcacgcagctgaccatgcgcaccttccacatcggcggcgcggcc
tcgcgcgcggcggtggcctccagcgtggaagccaagtccagcggcgtgatcggcttcaac
gccaccatgcgctacgtgaccaactccaagggcgagctggtggtgatcgcgcgttcgggc
gagatcatcatccaggacgaacacggccgcgagcgcgagcgccacaaggtgccctacggc
gccatcctggcgatcaagcccgaccagcagatcaaggccggcaccatcctggccaactgg
gacccgctgacccgacccatcatcacggaattcgccggcacggtgaagttcgagaacgtg
gaagagggcctcacggtcgccaagcaggtcgatgatgtgaccggtctgtccacgctggtg
gtgatcgatcccaagcgccgcggcgccacgaaggtggtgcgcccgcaggtcaagttgatc
gacgcgtccggcagcgaggtgaagatccccggcaccgaccacgccgtgaccatcggcttc
caggtcggcgccctgatccaggtgcgcgacggccaggacgtgggccccggcgaggtgctg
gcccgcatcccggtcgaaggccagaagacccgcgacatcacgggtggtctgccgcgcgtg
gccgagctgttcgaggcgcgttcgcccaaggacgctggcatcctggccgagatgaccggg
accgtgtccttcggcaaggagaccaagggcaagatccgcctgcagatcaccgaccccgag
ggcaaggtctgggaagagctcatcccgaaagagaagaacatcctggtgcacgaaggccag
gtggtcaacaagggcgagagcatcgtcgacggtccggccgatccgcaggacatcctgcgc
ctgctgggcatggaagagctcgcgcgctacatcgtcgatgaggtgcaggacgtctaccga
ctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgcgtcgtggtcgagaaccccggcgattcgtcctacatcggcggtgagcaggtggagcgc
tcggagatcctcaacaccaacgacgccctgcgcgccgacggcaagatccccgcgacctac
agcaacgtgctgctcggtatcaccaaggcctcgctgtcgaccgactcgttcatctccgcg
gcctccttccaggagaccacgcgcgtgctgaccgaagcggccatcatgggcaagcgcgac
gagctgcgtggcctgaaggagaacgtcatcgtcggccgcctgatccccgcgggcaccggc
atggcctaccacgaggcgcgcaaggtcaaggagaagatggacgacgaagagcgccgcgcc
atcgccgaggccgatgccctgtcgctggcggccgaccaggccgacgcggcggctggcgag
tccgccgagtaa
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integrated database retrieval system
