Hydrogenophaga sp. SNF1: SOM08_03980
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Entry
SOM08_03980 CDS
T10669
Name
(GenBank) RNA polymerase sigma factor FliA
KO
K02405
RNA polymerase sigma factor FliA
Organism
hydr Hydrogenophaga sp. SNF1
Pathway
hydr02020
Two-component system
hydr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hydr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SOM08_03980
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SOM08_03980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hydr03021
]
SOM08_03980
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
hydr02035
]
SOM08_03980
Transcription machinery [BR:
hydr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SOM08_03980
Bacterial motility proteins [BR:
hydr02035
]
Flagellar system
Flagellar assembly proteins
Stator
SOM08_03980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
Sigma70_r3
HTH_23
UPF0122
GerE
Phage_terminase
CT_C_D
Motif
Other DBs
NCBI-ProteinID:
WQB84486
LinkDB
All DBs
Position
823861..824580
Genome browser
AA seq
239 aa
AA seq
DB search
MYTAKGTLNREDQLRKYSPLVRRLAHHMIAKLPPSVELDDLIQVGMIGLTEAIARYEPSQ
GVQFETFASQRIRGAMIDELRDGDWMSRGSRKSQKDIEQAVHRLQQKLHRPPRESEIAAE
MGLTLADYQTLLAKVRGTQLVYLEDISGGGGDDEDGFLDRHMGDHEADPSSVLQDQRMRM
ALVGAIKTLPEREQHIMSMYYEHDMNLKEIAAVLGVTESRVCQLHSQSIARLRSKLREH
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
atgtacaccgccaaaggcacgctcaaccgcgaggaccagctgcgcaagtacagccccctg
gtccgtcgcctggcgcaccacatgatcgccaagctgcccccgagcgtggagctcgacgac
ctgatccaggtcggcatgatcggcctgaccgaggcgattgcccgctacgagccctcgcag
ggcgtgcagttcgagaccttcgcgagccagcgcatccgcggcgccatgatcgacgagctg
cgcgacggcgactggatgagccgcggctcgcgcaagagccagaaggacatcgagcaggcc
gtgcaccgcctgcagcaaaagctgcaccgcccgccgcgcgagagcgagatcgcggccgag
atgggcctgaccctggcggactaccagaccctgttggccaaggtgcgcggcacgcagctg
gtgtacctggaggacatcagcggcggtggtggcgacgacgaggacggcttcctcgaccgc
cacatgggcgaccacgaggccgacccctcgtccgtgctgcaggaccagcgcatgcgcatg
gccctggtgggggcgatcaagaccctgcccgagcgcgagcagcacatcatgagcatgtac
tacgagcacgacatgaacctgaaggaaatcgccgccgtgctcggcgtgaccgaatcgcgc
gtgtgccagctgcacagccagtcgatcgcgcggctgcgctcgaagctgcgggagcattga
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