Hydrogenophaga sp. SNF1: SOM08_04135
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Entry
SOM08_04135 CDS
T10669
Symbol
gspD
Name
(GenBank) type II secretion system secretin GspD
KO
K02453
general secretion pathway protein D
Organism
hydr Hydrogenophaga sp. SNF1
Pathway
hydr03070
Bacterial secretion system
Brite
Secretion system [BR:
hydr02044
]
Type II secretion system
General secretion pathway protein
SOM08_04135 (gspD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Secretin
Secretin_N
type_II_gspD_N0
Motif
Other DBs
NCBI-ProteinID:
WQB84516
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Position
complement(851719..853962)
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AA seq
747 aa
AA seq
DB search
MFALPPLAGRRSALALACALALSLPGAPTATAQTRPTEPVTLNFVGAEIEAVARTMATIT
GRSVVVDPRVRGTINLSTDRPVPPAAALNQFAAALRLQGFALVDTGGLYKIVPEADAKLQ
GNVVNAGAASALPASNTVVTQIFRLNHENANNLVPVLRPLIPPNNTINVNPGNNSLIITD
YAENLQRIGRIVAALDVPGASDVEIIPLQHAVAADIVPLIQRLIDPAASGTTAGAAAAGD
ASFRTTIVAEPRSNALVLRAANPARLALVKSLVVRLDQPSASVASGNIHVVYLKNADAVA
LATTLRAAIAAGDGGGSGGALGGGSSGGASSGGLSRASTGGLNLGGGASSGMGANSAAST
PVAASAQPSTGGMIQADPATNSLIITAPEPLYRQLRAVIDQLDSRRAQVYVESLIAEVND
DKAAEFGIQWQGASGQSGDRVIGLLGTNFGEGGRNIFNLAQGETAPAAGLNIGLARRTGG
VYVLGFLARFLQENGAGNILSTPNLLTLDNEEAKIVIGQNVPFVTGQFTNTGGGNNGSVN
PFQTIERKDVGITLRVKPQISENGTIKLTIYQEVSSVAPSSVNSSTGLITNLRSIESTVL
VNDGAIVVLGGLLQDEYAQNQDKVPGLGDVPVLGGLFRSETRSRKKTNLMVFLRPVVMRD
ERDTANLALDRYEQMRSIQRGLQPERSSVLKINESPVLGPQALPYERLAPRPTPLGAPEG
SPNAVPAPTPPAGAPAPAPAPAPAPQQ
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgtttgccctcccccccctggccggacgccgcagcgcactcgcgctggcctgcgcactg
gcgctgagcctgcccggcgcgccgacggccaccgcgcaaacccggccgaccgagcccgtc
acgctgaacttcgtgggtgccgaaatcgaggccgtggcccgcaccatggccaccatcacc
ggccgcagcgtcgtcgtcgacccgcgcgtgcgcggcaccatcaacctctccaccgaccgc
cccgtgcccccggccgccgcgctgaaccaattcgccgccgcgctgcgcctgcagggcttc
gcgctggtggacaccggcgggctctacaagatcgtgcccgaggccgacgccaagctgcag
ggcaacgtggtgaacgcgggggccgcgtcggcgctgccggcgtccaacaccgtggtcacg
cagatcttccggctcaaccacgagaacgcgaacaacctggtgccggtgctgcgcccgctg
atcccgcccaacaacaccatcaacgtcaacccgggcaacaactccctgatcatcaccgac
tacgccgagaacctgcagcgcatcggccgcatcgtcgccgcgctggacgtgcccggcgcg
agcgacgtcgagatcattccgctgcagcacgcggtggcggccgacatcgtgccgctgatc
cagcgcctgatcgaccccgccgccagcggcaccacggccggcgccgccgccgccggcgat
gcctccttccgcaccaccatcgtggccgagccgcgcagcaacgcgctggtgctgcgcgcg
gccaacccggcgcgcctggccctggtcaagtcgctcgtggtgcggctcgaccagccctcg
gccagcgtggccagcggcaacatccacgtggtctacctcaagaacgccgacgcggtggcc
ctggccaccacgctgcgcgcggccatcgcggcgggtgacggcggcggcagcggcggcgcc
ctcggcggcggcagcagcggcggcgcgtccagcggcggcctgtcgcgcgccagcaccggc
ggcctcaacctgggcggcggcgccagcagcggcatgggggccaacagcgccgccagcacg
ccggtggcggccagtgcccagccctctaccggcggcatgatccaggccgacccggcgacc
aactcgctcatcatcaccgcgcccgagccgctgtaccgccagctgcgcgcggtcatcgac
cagctcgactcgcgccgcgcccaggtgtatgtggaaagcctgatcgccgaggtgaacgac
gacaaggccgccgagttcggcatccagtggcagggcgcctccggccagtcgggtgaccgc
gtgatcggcctgctcggcaccaatttcggcgaaggcgggcgcaacatcttcaacctcgcg
caaggcgagacggcgcccgccgccggcctgaacatcggcctggcgcgccgcaccggcggc
gtctacgtgctgggcttcctggcgcgcttcctgcaggaaaacggcgccggcaacatcctg
tccacacccaacctgctcacgctggacaacgaagaggccaagatcgtcatcggccagaac
gtgcccttcgtcaccgggcagttcaccaacaccggcggcggcaacaacggctcggtcaac
cccttccagaccatcgaacgcaaggacgtgggcatcaccctgcgcgtgaagccccagatc
agcgagaacggcaccatcaagctgaccatctaccaggaggtgtccagcgtggcgccgtcc
tcggtgaattccagcaccggcctcatcaccaacctgcgcagcatcgaaagcaccgtgctc
gtcaacgacggcgccatcgtggtgctgggcggcctgctgcaggacgagtacgcgcagaac
caggacaaggtgcccggcctgggcgacgtgcccgtgctcggcggcctgttccgcagcgaa
acccgcagccgcaagaaaaccaacctgatggtgttcctgcgccccgtggtgatgcgcgac
gagcgcgacaccgccaacctcgcgctcgaccgctacgagcagatgcgcagcatccagcgc
gggctgcagcccgagcgcagcagcgtgctcaagatcaacgagtcgcccgtgctgggtccg
caggccctgccctacgagcgcctggcgccgcggcccacgccgctgggcgcgcccgaaggt
tcgcccaacgccgtccccgcgcccacgccgccggcgggcgccccggcgcccgcccccgcc
cctgcccctgccccccagcagtga
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