Hydrogenophaga sp. SNF1: SOM08_04880
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Entry
SOM08_04880 CDS
T10669
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hydr Hydrogenophaga sp. SNF1
Brite
KEGG Orthology (KO) [BR:
hydr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hydr03016
]
SOM08_04880
Enzymes [BR:
hydr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SOM08_04880
Transfer RNA biogenesis [BR:
hydr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SOM08_04880
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Gene cluster
GFIT
Motif
Pfam:
RNB
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
WQB84654
LinkDB
All DBs
Position
complement(999025..1001088)
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AA seq
687 aa
AA seq
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MHILFDEAGKFLTGRLLSESDSSLQVELDSGKRVKVKAANALLRFEKPAPAELLKEAGSL
AEGMELELAYEFAPEDEFGFADLAREYFSAQAGTAQQVAALLTLQNAPHYFRRAGKGRFK
KAPPEIVAQALAAIEKKKELQARIEAWAAELVAGRCPEPVHQQLYRILFKPDKNGPEYKA
VVEAARLSHTAPLVLLQQAGAIRSAYQFHWQRFLFEHFPKGTGFPALSAPPVAEALPLAA
VAAFSIDDSATTEIDDALSVQGLGSGTVTLGIHIAAPGLAIAPGDPLDELARTRLSTVYM
PGHKITMLPDAVVDAYTLQAGRDCPAVSLYVEIDEATLAVGPSRTALERVPIAHNLRHDR
LDTIVTEAWLAGEANAQAPAELAGLQPALVFLHRFAREHKAQREIARGKPETFTRPDYTF
KLEGVQGDEPAGDERVLIGTRSRGAPLDLMVAEAMILANKTWGLWLAECGVPGIYRSQAS
LLPGIKVRMGTKALPHAGIGVKAYTWATSPLRRYVDLVNQWQIVACARHGKTAALAAPFK
PKDANLLAVVSAFDAAHTAYNGFQGGMERYWTLQYLRQNGITELTATLIKDGLVRADTLP
LVLPVLGADGLQRGAHLRIRLGAIDDITLELSGTVIERLDQPVEDPAALESEAEEDEEEP
LGAPVALAIDLDDAAAGETPPGGTQNG
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgcacatcctgttcgacgaggccggcaagttcctgaccggccgcctgctgtccgagtcc
gacagttccctccaggtggaactcgactccggcaagcgggtgaaagtgaaagcggccaac
gcgctgctgcggttcgaaaaacccgcgcccgccgagctcctgaaggaggccggctcgctg
gccgagggcatggagctcgaactcgcttacgaattcgcgcccgaggacgagttcggtttc
gccgacctcgcgcgcgagtacttcagcgcccaggccggcaccgcccagcaggtggcggcg
ctgctcacgctgcagaacgcgccgcactacttccgccgcgccggcaagggccgcttcaag
aaggccccgcccgagatcgtggcccaggccctggccgccatcgagaagaagaaggagctg
caggcccgcatcgaggcctgggccgccgagctggtggcgggccgctgccccgagccggtg
caccagcagctctaccgcatcctcttcaagcccgacaagaacggtcccgagtacaaggcc
gtggtcgaggccgcgcgcctgagccacaccgcgccgctggtgctgctgcagcaggcgggg
gccatccgcagcgcctaccagttccactggcagcgcttcctgttcgagcacttccccaaa
ggcacgggcttccccgcgctgagcgccccgccggtggccgaggcgctgccgctggcggcc
gtggcggccttctccatcgacgactccgccaccaccgaaatcgacgacgcgctctccgtg
cagggcctgggctcgggcacggtcacgctgggcatccacatcgcggcgccggggctggcc
atcgcgccgggtgacccgctcgacgagctggcgcgcacgcgcctgtccaccgtctacatg
cccggccacaagatcaccatgctgcccgacgcggtggtcgacgcctacacgctgcaggcc
ggacgcgactgcccggccgtctcgctgtacgtggagatcgacgaggccacgctggccgtg
ggccccagccgcaccgcactggagcgcgtgcccatcgcgcacaacctgcgccacgaccgg
ctcgacacgatcgtcaccgaggcctggctcgccggcgaagccaacgcccaggccccggcc
gagctggccgggctgcagcccgcgctggtcttcctgcaccgcttcgcgcgcgaacacaag
gcgcagcgcgaaatcgcgcgcggcaagcccgagactttcacgcgccccgactacaccttc
aagctggagggcgtgcagggcgacgagcccgccggcgacgagcgcgtgctcatcggcacg
cgctcgcgcggcgcgccgctggacctgatggtggccgaggccatgatcctggccaacaag
acctggggcctgtggctggccgagtgcggcgtgcccggcatctaccgcagccaggccagc
ctgctgccgggcatcaaggtgcgcatgggcaccaaggccctgccgcacgcgggcatcggc
gtgaaggcgtacacctgggccacctcgccgctgcgccgctacgtcgacctggtgaaccaa
tggcagatcgtggcctgcgcgcgccacggcaagaccgccgcgctggccgcgcccttcaag
cccaaggacgccaacctgctcgccgtggtcagcgccttcgacgccgcccacaccgcctac
aacggcttccagggcggcatggaacgctactggacgctgcagtacctgcgccagaacggc
atcaccgagctcaccgccacgctcatcaaggacggcctggtgcgcgccgacaccctgccc
ctggtgctgccggtgctgggcgccgatggcctgcagcgcggtgcccacctgcgcatccgg
ctgggggccatcgacgacatcaccctggagctgagcggcacggtcatcgagcggctcgac
cagcccgtggaggaccccgcggcgctcgagtccgaggccgaggaggacgaggaagagccg
ctgggcgccccggtggcgctggccatcgacctggacgacgccgcggcgggcgaaacgccc
cccggtggaacgcagaacggataa
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