Hydrogenophaga sp. SNF1: SOM08_04980
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Entry
SOM08_04980 CDS
T10669
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
hydr Hydrogenophaga sp. SNF1
Pathway
hydr02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
hydr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SOM08_04980
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
hydr02022
]
SOM08_04980
02035 Bacterial motility proteins [BR:
hydr02035
]
SOM08_04980
Two-component system [BR:
hydr02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
SOM08_04980
Bacterial motility proteins [BR:
hydr02035
]
Pilus system
Twitching motility proteins
SOM08_04980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
HTH_23
AAA
Mg_chelatase
DUF8010
HTH_28
HTH_50
AAA_7
AAA_16
HTH_30
Motif
Other DBs
NCBI-ProteinID:
WQB84674
LinkDB
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Position
complement(1022204..1023730)
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AA seq
508 aa
AA seq
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MSVAASASILVVDDEPDLRTLYELTLLREGHAVTTAADLAQARECLAQQRYDVLITDMQL
PDGLGLTLLRDIADSPRTEKCIVITAFGSAENAVESLKAGAFDYLTKPVDLRQLRSAVGS
ALRSQRAPLAAASERPATSNEPTRSAPPPPSGVRALARLVGQAPSIVQTKARIEKVATSM
APVLILGESGTGKELVARAVHECSHRASGPFVAVNCGAIPENLIEAEFFGARKGAYTGAS
ADREGYFQAAHGGTLFLDEIGDLPLSMQAKLLRAIQERRVRSLGAVQEDVVDVRLVSATH
RDLPALVQAGQFRQDLYYRLNVIGLRTPALRDRPEDLPLLAQALLERLCAEAGQAVPELS
PAALAWLQARELPGNVRELENLLQRALALASGPVLQPADFGETGDTEPATLPDPLPDAPV
PAGGPYRFVPLTPPAASADEPALPSDLQSYLDEQERQVLLKALQECGYNRTAAAARLGLN
LRQIRYRIQRLGIVVPGATGHGDTDATD
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtcgccgcgagcgcctccatcctggtcgtcgatgacgagcccgacctgcgcacg
ctctacgagctgacgctgctgcgcgaaggccacgccgtcaccaccgccgccgacctggcg
caggcgcgcgagtgcctggcccagcagcgctacgacgtgctgatcaccgacatgcagttg
cccgacggcctgggcctgacgctgctgcgcgacatcgccgacagcccgcggaccgagaag
tgcatcgtcatcaccgccttcggttcggccgagaacgcggtcgagtcgctcaaggccggc
gccttcgactacctcaccaagccggtcgacctgcgccagttgcgcagcgccgtcggctcg
gccctgcgcagtcagcgcgcgcctctggccgccgccagcgagcgcccggccaccagcaac
gagcccacgcgcagcgcgccgccgccgcccagcggggtgcgcgcgctcgcgcgcctggtg
ggccaggcacccagcatcgtgcagaccaaggcgcgcatcgagaaggtcgccaccagcatg
gcgccggtgctcatcctgggcgagtcgggcaccggcaaggagctcgtggcgcgcgccgtg
cacgaatgcagccaccgcgccagcggccccttcgtggcggtgaactgcggcgccatcccc
gaaaacctcatcgaggccgagttcttcggcgcccgcaagggcgcctacaccggcgccagc
gccgatcgcgaaggctatttccaggccgcgcacggcggcaccctgttcctcgacgagatc
ggcgacctgcccctgtccatgcaggccaagctgctgcgcgccatccaggaacgccgggtg
cgatcgctcggcgcggtacaggaggacgtggtcgacgtgcgcctggtcagcgccacccac
cgcgacctgcccgcgctggtgcaggccggccagttccgccaggacctgtactaccggctg
aacgtgatcggcctgcgcacgcccgcgctgcgcgaccgacccgaggacctgcccctgctc
gcgcaggccctgctcgagcgcctgtgcgccgaagccggccaggccgtgcccgaactctcg
ccggccgcgctggcctggctgcaggcgcgcgagctgccgggcaacgtgcgcgagctcgag
aacctgctgcagcgcgcgctcgcgctggccagcggccccgtgctgcaacccgccgatttc
ggcgaaaccggcgacaccgagcccgccacgctgcccgacccgctgcccgacgcaccggtg
ccggctggcggaccctaccgcttcgtgcccttgacgccgccggccgcctccgccgacgag
cccgccctgcccagcgatctgcagagctacctcgacgagcaggaacgccaggtgctgctc
aaggccctgcaggaatgcggctacaaccgcaccgcggcggcggcaaggctgggcctgaac
ctgcggcagatccgctaccgcatccagcgcctgggcatcgtggtgcccggcgcgaccggc
catggcgacaccgacgccaccgattga
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