Hydrogenophaga sp. SNF1: SOM08_05715
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Entry
SOM08_05715 CDS
T10669
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hydr Hydrogenophaga sp. SNF1
Pathway
hydr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hydr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOM08_05715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hydr03019
]
SOM08_05715
Enzymes [BR:
hydr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SOM08_05715
Messenger RNA biogenesis [BR:
hydr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SOM08_05715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
WQB84811
LinkDB
All DBs
Position
1178306..1179775
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AA seq
489 aa
AA seq
DB search
MTQSFSELNLAPALAKAVAEMGYETMTPIQAQAIPQVLTGRDVMGAAQTGTGKTAAFSLP
LLQRLLKHENASTSPARHPVRALVLLPTRELADQVAEQVKLYAKYTQLRSTVVFGGMDMK
PQTLELKKGVEVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSY
LPKQRTTLLFSATFSPEIKRLASSYLQDPITVEVARSNATASTVEQHFYRVDDDDKRGTL
RQILRERGLKQAFVFVNSKLGCARLARSLERDGLNTAALHGDKSQDERLKALDAFKQGNV
DLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFVSGRDARL
VGELEKLLGKKLEIEALELEQDRRPAGRFNDGQRAWQREESGREGRDNREAREPRESRGA
RAPAPRVARAPADPFFDQPYEAKPAGDTPPQWETAQRANAPKGLSPNIKQRRKVPALFKS
SAPPPPAAS
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgacccaaagcttctccgaactcaacctcgcgcccgcgctcgcgaaggccgtggccgaa
atgggctacgagaccatgacgcccatccaggcgcaggccatccctcaggtgctcaccggt
cgcgacgtgatgggcgcggcccagaccggcaccggcaaaaccgccgccttctccctgccg
ctgctgcagcgcctgctcaagcacgagaacgcctccacctcgcccgcgcgccaccccgtg
cgcgccctggtgctgctgcccacgcgcgagctggccgaccaggtggccgagcaggtcaag
ctctacgccaagtacacgcagctgcgcagcaccgtggtgttcggcggcatggacatgaag
ccccagaccctggagctgaagaagggcgtggaggtgctggtggccacgccggggcgcctg
ctggaccatatcgaggccaagaactgcgtgctcaatcaggtcgagtacgtggtgctcgac
gaggccgaccgcatgctcgacatcggcttcctgcccgacctgcagcgcatcctgagctac
ctgcccaagcaacgcaccacgctgctgttctcggccaccttctcgcccgagatcaagcgc
ctggccagcagctacctgcaggaccccatcacggtggaggtggcgcgttccaacgccacg
gcctccacggtcgagcagcacttctaccgcgtcgacgacgacgacaagcgcggcacgctg
cgccagatcctgcgcgagcgcgggctcaagcaggccttcgttttcgtcaacagcaagctc
ggctgcgcgcgcctggcgcgctcgctggagcgcgacggcctgaacaccgccgcgctgcac
ggcgacaagagccaggacgagcgcctgaaggcactcgacgccttcaagcagggcaacgtc
gatctgctcgtctgtaccgacgtggccgcgcgcggactcgacatcaaggacgtgccggcg
gtgttcaacttcgatatcccgttcaacgccgaggactacgtgcaccgcatcggccgcacc
ggccgcgcgggcgcctccggcctggcggtgtccttcgtctcgggccgcgacgcgcgcctg
gtgggcgaactggaaaagctgctgggcaagaagctggagatcgaggcgctggagctggag
caggaccgccgccccgcgggccgcttcaacgacggccagcgcgcctggcagcgcgaggag
tcggggcgcgaaggccgcgacaaccgcgaggcccgtgaaccgcgtgaatcgcgcggcgcc
cgtgcgccggccccgcgtgtggcgcgcgcgccggccgaccccttcttcgaccagccttac
gaggccaagccggccggcgatacgccgccgcagtgggaaaccgcgcagcgcgcgaacgcg
cccaagggcctgtcgcccaacatcaagcagcggcgcaaggtgccggcgctgttcaagtcc
agcgcgccgccgccgccggccgcgtcctga
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