Hydrogenophaga sp. SNF1: SOM08_09850
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Entry
SOM08_09850 CDS
T10669
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
hydr Hydrogenophaga sp. SNF1
Brite
KEGG Orthology (KO) [BR:
hydr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hydr03400
]
SOM08_09850
Enzymes [BR:
hydr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SOM08_09850
DNA repair and recombination proteins [BR:
hydr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
SOM08_09850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
WQB85602
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Position
2072012..2074546
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AA seq
844 aa
AA seq
DB search
MDELARQVAQAGLAPSRVVVLLPYGALVAEARRAWAARAPQASGFAPRFTTARDWAAALS
PWRPGSDDISHDMARDALVAAAWIERVVRERLEPGLRRELVARLIGAARQLAPLAAAQPP
ERRAAWAEDRRAALAATLGSAAAQWESLVASLAITWAGSSAYVTDALWSPLAAPGADADR
LLCLPGHHPDPLAEALLAHWGDRAARLAWSAPAEPAPRVWACEDFEAEAQAAAACAIEHL
NAGRAPVALIANDRLLTRRASALLVGAGVRLRDETGWKLSTTRAAASLMALLRAADARAS
TDEVLDWLKLSPAFPPLAVESLERRLRQRGVARWSAVPLDWRGADIDPQRAELQASRPLL
LWLKDTAAALERSGQWAALQADEAGRQLIGVLRLGEGAHELDGLGEAAAGERGAKARWPL
TAFAAWVRDVLEGAVFQPPWRGAPQVVVLPMAQRLGRRVAAVVAPGSDERHLSASPEPDS
AWTAAQRALLGLPDREALARAEASAWAQLFDGAPVDALWRRHEAGEALLPSAFIDGIEPR
PASELLPASAVPAGGTAPPAARAPALLPERLSASAYDDLRTCPYRFFARRQLRLDEVDEL
DAEPDQGDLGNWLHAVLRAFHEARGDDRPGEDADRAALDALAERVALDMGLGDEVQAGGF
LPYRAVWPALREAYLRWLWPHEAEGWRFVAAEAEREQRAGRWALYGRLDRIDARRDADGR
ESFVIDHKTESRARTEARVKEPMEDTQLAFYAALLPEPRLRAAYLSIADTRGERDEPAKL
IEQTEVLAARDAIVQGLVHDLDRVAGGAAMRALGEGMACEYCAARGLCRKDFWTPSTDGV
QGLP
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggacgaactggcgcgccaggtcgcccaggcgggcctggcgccgtcgcgcgtggtcgtg
ctgctgccctacggagcgctcgtggccgaggcgcgccgcgcctgggccgcccgtgcgccg
caggcctcgggcttcgcgccgcgcttcaccacggcgcgcgattgggccgccgcgctgtcg
ccctggcggccgggctcggacgacatcagccacgacatggcgcgcgacgcgctggtcgcc
gccgcctggatagagcgcgtggtgcgcgagcgcctggagcccggcctgcgccgcgaattg
gtggcgcgcctcatcggcgccgcgcggcagctggccccgctggcggccgcgcagccgccc
gagcggcgcgcggcctgggccgaggaccgccgcgccgcgttggccgccacgctgggctcg
gccgccgcgcaatgggagtcgctggtggcgagcctggccatcacctgggcgggcagctcg
gcctacgtcaccgacgccttgtggtcaccgctggccgcacccggtgccgacgccgaccgc
ctgctgtgcctgcccggccaccaccccgacccgctggccgaggccttgctggcccactgg
ggtgatcgcgccgctcggctcgcctggtcggcgcccgccgagccggccccgcgcgtgtgg
gcctgcgaggacttcgaggccgaggcccaggccgcggccgcctgcgccatcgaacacctc
aacgccgggcgtgcgccggtggcgctgatcgccaacgaccgcttgctcacccgccgtgcg
agcgcgctgctggtgggcgccggcgtgcgcctgcgcgacgagaccggctggaagctgtcc
accacgcgcgcggccgccagcctgatggccctgctgcgcgcggcggacgcgcgcgccagc
accgacgaggtgctggattggctcaagctctcgccggccttcccgccgctggcggtggag
tcgctggagcggcggctgcggcagcggggtgtggcgcgctggtccgccgtgccgctggac
tggcgcggcgccgacatcgatccccagcgcgccgaactgcaggcctcgcgccccttgctc
ctgtggctcaaggacaccgcggcggccctggagcgcagcggccagtgggctgccctgcag
gccgacgaagccggccgccaactgattggcgtgttgcgattgggcgagggcgcgcacgaa
ctcgacggcctgggtgaggccgccgccggtgagcgcggcgccaaggcccgctggccgctc
acggccttcgccgcctgggtgcgcgacgtgctcgagggcgcggtgttccagccaccgtgg
cgtggcgcgccgcaggtcgtcgtgctgccgatggcgcagcgcctgggccgccgcgtggcc
gccgtggtggcgcccggcagcgacgaacgccacctgagcgccagccccgaacccgacagc
gcctggaccgccgcacagcgcgcgctgctgggcctgcccgaccgcgaggccctggcccgc
gccgaggcctcggcctgggcgcagttgttcgacggcgcgccggtggacgcgctgtggcgc
cgccacgaggccggcgaggcgctgctgcccagcgccttcatcgacggcatcgaaccgcgc
ccggccagcgagctgctgcccgccagcgccgtgcccgcgggcggcacggccccgcccgcg
gcccgcgcgcccgcgctgctgcccgagcgcctgtccgccagcgcctacgacgacctgcgc
acctgcccctaccgcttcttcgcgcgccgccagttgcggctcgacgaggtggacgagctc
gacgccgaacccgaccagggcgacctgggcaactggctgcacgcggtgctgcgcgctttc
cacgaagcgcgcggcgacgatcgcccgggcgaggacgccgaccgcgccgcgctcgacgcg
ctggccgagcgtgtggcgctggacatgggcctgggtgatgaggtgcaggccggcggcttc
ctgccgtaccgcgccgtctggcccgcgctgcgcgaggcctacctgcgctggctctggccg
cacgaggccgagggctggcgcttcgtggcggccgaggccgagcgcgagcagcgcgcgggc
cgctgggccttgtatggccggctcgaccgcatcgacgcgcggcgcgacgccgatggccgc
gagagcttcgtcatcgaccacaaaaccgagagccgcgcgcgcaccgaggcgcgcgtgaag
gagccgatggaggacacgcaactggccttctacgccgcgctgctgcccgagccgcgcctg
cgcgcggcctacctcagcatcgccgacacgcgcggcgagcgcgacgaacccgcgaagctg
atcgagcagaccgaggtgctggcggcgcgcgacgccatcgtgcagggcttggtgcacgac
ctcgaccgcgtggccggcggtgccgccatgcgggcgttgggcgagggcatggcctgcgag
tactgcgcggcgcgcggcctgtgccgcaaggatttctggaccccgtcgaccgacggcgtg
cagggactgccatga
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