Hydrogenophaga sp. SNF1: SOM08_09885
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Entry
SOM08_09885 CDS
T10669
Symbol
dnaX
Name
(GenBank) DNA polymerase III subunit gamma/tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
hydr Hydrogenophaga sp. SNF1
Pathway
hydr03030
DNA replication
hydr03430
Mismatch repair
hydr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hydr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SOM08_09885 (dnaX)
03430 Mismatch repair
SOM08_09885 (dnaX)
03440 Homologous recombination
SOM08_09885 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hydr03032
]
SOM08_09885 (dnaX)
03400 DNA repair and recombination proteins [BR:
hydr03400
]
SOM08_09885 (dnaX)
Enzymes [BR:
hydr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SOM08_09885 (dnaX)
DNA replication proteins [BR:
hydr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SOM08_09885 (dnaX)
DNA repair and recombination proteins [BR:
hydr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SOM08_09885 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNAX_ATPase_lid
DNA_pol3_gamma3
AAA
DNA_pol3_tau_5
RuvB_N
AAA_22
AAA_18
AAA_14
AAA_19
AAA_30
AAA_5
Rad17
Adeno_E1B_55K_N
SKI
AAA_16
TsaE
AAA_2
nSTAND3
AAA_28
Herpes_Helicase
RCF1-5-like_lid
Motif
Other DBs
NCBI-ProteinID:
WQB85607
LinkDB
All DBs
Position
2080866..2082818
Genome browser
AA seq
650 aa
AA seq
DB search
MSYVVLARKYRPRNFREMVGQGHVVQALANALTSQRLHHAYLFTGTRGVGKTTVSRILAK
SLNCTGPDGQGGITAEPCGVCQACTDIDAGRFVDYTELDAASNRGVDEVQSLLEQAVYKP
VQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNL
RPMAPETVAEHLQQVLQAEGVNAEPQALRLLSRAARGSMRDALSLTDQAIAFGGGQLLEA
PVRQMLGAVDRSHVLRLIDALARADGAAVVDTVNTLRMNGLSAASTLEEMTGLLQRMAVL
QSVPESATTDDDPDAPEIARLAEALPADETQLLYSLCLHGRTELGLAPDEYAALTMVLLR
LLAFKPSGAAEKKTLRPAEARPAPAVPVATAAPAVPAAPVAVAPRPVPAAPVGAPVAGEP
GARPAPAAPAQAPAPVAPVAREPIAAPPLPATAADGPPDDEAPWPEPDEDLPPWDPVPAP
TAARSPAAPAPAAAPVVRIPVRDPGSPGRLDQPRPAAAPLQPTPEGDFWSGLVQQLADSG
AITALTRELALQSQLVSREGARWLLRIERETLAQGSNRERLMAALHAAGHTVELALENGV
VTDSPARRATAEAERRQREAEQQILGDPFVQAMMRDFGGTIVPGSLKAIS
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacgtcgtcctcgcccgcaagtaccggccgcgcaatttccgcgagatggtgggc
cagggccacgtggtgcaggccctcgccaacgcgctcaccagccagcgcctgcaccacgcc
tacctgttcacgggcacgcgtggtgtgggcaagaccacggtctcgcgcatcctggccaaa
tcgctcaactgcaccgggcccgacggtcagggcggcatcaccgccgagccctgtggtgtg
tgccaggcctgcaccgacatcgatgccggccgcttcgtcgactacaccgaactcgacgcg
gcctccaaccgcggcgtggacgaggtgcagtcgctgctggagcaggcggtctacaagccg
gtgcagggccgcttcaaggtcttcatgatcgacgaggtccacatgctcaccaacaccgcg
ttcaacgcgatgttgaagacgctggaggagccgcccgagtacctcaagttcgtgctcgcc
accaccgacccgcagaaggtgccggtgacggtgctgtcgcgctgcctgcagttcaacctg
cgtcccatggcacccgagaccgtggccgaacacctgcagcaggtgctgcaggccgagggc
gtgaacgccgagccgcaggcgctgcggctgctgtcgcgcgcggcgcgcggctccatgcgc
gacgcgctgtcgctcaccgaccaggccatcgccttcggcggcggccagctgctggaggcg
ccggtgcgccagatgctcggcgcggtcgaccgcagccatgtgctgcgcctcatcgacgcg
ctggcgcgcgccgacggcgcggccgtggtggacaccgtgaacacgttgcgcatgaacggc
ttgagcgcggcgtccacgctggaggagatgaccggcctgctgcagcgcatggcggtgctg
cagagcgtgcccgagtcggccaccaccgacgacgaccccgacgcgcccgagatcgcgcgc
ctggccgaggccctgcccgccgacgagacgcaactgctctacagcctgtgcctgcatggc
cgcaccgaactgggcctggcacccgacgagtacgcggccttgaccatggtgctgctgcgc
ctgctcgccttcaagccttcgggcgcggcggaaaaaaaaactctgaggccggctgaggcc
cggccagcgccggcggtaccggtcgccacggcggcgcccgccgtgcccgctgcgcctgtg
gccgtcgcaccgcgtccggtgcccgctgcgcccgtgggggcgccggtcgctggcgaaccg
ggcgcgcgaccggcccccgccgcgccagcgcaggcccccgcgccggtggcgcccgtggcc
cgggagcccatcgccgcgccgccgctgcccgcgaccgccgccgatggcccgcccgacgac
gaagccccgtggcccgagcccgacgaggacctgccgccctgggacccggtgccggcgccc
acggcggctcggtcacccgcggcaccggcccccgccgccgcgccggtggtgcgcatcccc
gtgcgcgacccgggctcgccgggccggctagaccaaccccggcccgccgccgcgcccttg
cagcccacgcccgagggcgacttctggtccgggctggtgcagcagctggcggacagtggc
gctatcaccgcgctgactcgcgagctcgcgctgcagtcacagctggtgtcgcgcgagggt
gcgcgctggctgctgcgcatcgaacgcgaaaccctggcccagggcagcaaccgcgaacgg
ctcatggccgcgctgcacgccgcgggccacaccgtcgaactcgcgctggagaacggcgtg
gtcaccgattcgcccgcgcggcgcgccaccgccgaggccgagcgccgccagcgcgaggcc
gagcagcagatcctcggcgaccccttcgttcaggccatgatgcgcgacttcggcggcaca
atcgtgcccggctcgctcaaggcgataagctga
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