Hydrogenophaga sp. SNF1: SOM08_12155
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Entry
SOM08_12155 CDS
T10669
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hydr Hydrogenophaga sp. SNF1
Pathway
hydr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hydr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SOM08_12155 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hydr03021
]
SOM08_12155 (rpoD)
Transcription machinery [BR:
hydr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SOM08_12155 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r2
Sigma70_r1_1
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
DUF6522
Motif
Other DBs
NCBI-ProteinID:
WQB81769
LinkDB
All DBs
Position
complement(2555122..2557497)
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AA seq
791 aa
AA seq
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MPAKKASPSAAATKTAAKKAAPAKAQPVAAPKKAPAVTTKTTPTKAAAKAAPAKKAAAKT
TASSTAKKAKPEALAEELLEGEAPAKKKPGRPAKAAADKPAAKRGRKPKADAKGKGEDDL
DDADLGDIDEDLVGDDVPEEASTEEAQPVEKAKPLRMKISKAKERALMKEFGLDETVLSE
EEARARRERLKTLIKLGKTRGYLTHGEINDHLPDKLVEAETLEVVVSLLNDMGVAVYEQT
PDAETLLLNNTGPTAATEEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREG
EIEIAKRIEGGLHSMMEAISESPATIAEILAMAEEIREGKVVISTVVDGFADADEADDYV
AEEDFDDYDEADDDDGKGGSKALTRKLEELKREALERFDAMRGMFEKLHKTYDKEGYGSP
HYAKTQQAITEKLMTIRFTAKAIEKLCSTVRGQVDEIRKKERELRRIIVDKCGMPQETFI
KDFPPNLLNLKWVEKQAAAGKPWSTVLERNIPPVQELQQGLIDIQSSVVVPIEHLKDIHK
RMNNGEASSRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR
GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDASIL
AEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTTNTAPIEAAMQAGLREV
VKEILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIESKAVRKLKHPSR
SDKLRSFIDSL
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcgaagaaagccagtccgtccgctgccgccaccaagaccgccgccaagaaggcc
gctcctgccaaagcccaaccggtggccgctcccaagaaagcccctgcagtgacgaccaag
accacccccaccaaagccgccgccaaggccgcgccggccaagaaggccgccgccaagacc
accgccagcagcaccgcgaaaaaagccaagcccgaggccctggccgaggagctgctggaa
ggcgaagcccccgccaagaagaagcctggccgccccgccaaggccgcggccgacaagccc
gccgccaagcgcggccgcaagcccaaggccgacgccaagggcaagggcgaggacgatctc
gacgacgccgacctcggtgatatcgacgaggacctcgtcggcgacgacgtgcccgaagag
gccagcaccgaggaagcgcagccggtcgagaaggccaagccgctgcgcatgaagatcagc
aaggccaaggagcgtgcgctgatgaaggaattcgggctggacgagaccgtcctgtccgag
gaggaggcgcgcgcccgtcgcgagcgcctcaagaccctgatcaagctgggcaagacgcgc
ggctacctcacgcacggcgagatcaacgaccacctgcccgacaagctggtcgaagccgag
accctggaagtggtggtctcgctgctcaacgacatgggcgtggccgtctacgaacagacg
cccgacgccgagacgctgctgctcaacaacaccggccccaccgccgccaccgaagaagag
gcggaagaggaagccgaagccgccctgtccaccgtggacagcgaattcggccgcaccacc
gacccggtgcgcatgtacatgcgcgagatgggcacggtggagctgctcacgcgcgagggc
gagatcgaaatcgccaagcgcatcgaaggcggcctgcacagcatgatggaggcgatcagc
gaatcgcccgccaccatcgccgagatcctggccatggccgaggagatccgcgaaggcaag
gtcgtgatctccaccgtggtggacggcttcgccgacgccgacgaggccgacgactacgtc
gccgaggaagacttcgacgactacgacgaggccgacgacgacgatggcaagggcggctcc
aaggcactcacgcgcaagctggaggaactcaagcgcgaggcgctggagcgtttcgacgcc
atgcgcggcatgttcgagaagctgcacaagacctacgacaaggaaggctacggcagcccc
cactacgccaagacgcagcaggccatcaccgagaagctgatgaccatccgcttcacggcc
aaggcgatcgagaagctgtgcagcaccgtgcgcggccaggtcgacgagatccgcaagaaa
gagcgcgagctgcgccgcatcatcgtggacaagtgcggcatgccgcaggagaccttcatc
aaggacttcccgcccaacctgctcaacctcaagtgggtggagaagcaggccgccgcgggc
aagccctggagcacggtgctcgaacgcaacatcccgccggtgcaggaactgcagcagggc
ctgatcgacatccagagcagcgtggtggtgcccatcgagcacctcaaggacatccacaag
cggatgaacaacggcgaggcctcctcgcgcgacgccaagaaggaaatgatcgaggccaac
ctgcgcctggtgatctccatcgcgaagaagtacaccaaccgcggcctgcaattcctggac
ctgatccaggaaggcaacatcggcctgatgaaagcggtggacaagttcgaataccgccgc
ggctacaagttctcgacctatgccacctggtggatccgccaggccatcacgcgctcgatc
gccgaccaggcgcgcaccatccgcatcccggtgcacatgatcgagaccatcaacaagatg
aaccgcatcagccgccagcacctgcaggagttcggcttcgagcccgatgcgtccatcctg
gccgagaagatggagatgcccgaggacaagatccgcaagatcatgaagatcgccaaggaa
ccgatctccatggaaacgccgatcggcgacgacgacgattcgcacctgggcgacttcatc
gaggacaccaccaacaccgcccccatcgaagcggccatgcaggccggcctgcgcgaggtg
gtgaaggaaattctcgacagcctcacgccgcgcgaagccaaggtgctgcgcatgcgcttc
ggcatcgagatgtccaccgaccacacgctggaagaagtgggcaagcagttcgatgtcacg
cgcgaacgcatccgccagatcgagagcaaggcggtgcgcaagctcaagcacccgagccga
agcgacaagctgcgcagcttcatcgactcgctctga
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