Hydrogenophaga sp. SNF1: SOM08_12195
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Entry
SOM08_12195 CDS
T10669
Name
(GenBank) HU family DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
hydr Hydrogenophaga sp. SNF1
Brite
KEGG Orthology (KO) [BR:
hydr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hydr03032
]
SOM08_12195
03036 Chromosome and associated proteins [BR:
hydr03036
]
SOM08_12195
03400 DNA repair and recombination proteins [BR:
hydr03400
]
SOM08_12195
DNA replication proteins [BR:
hydr03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
SOM08_12195
Chromosome and associated proteins [BR:
hydr03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
SOM08_12195
DNA repair and recombination proteins [BR:
hydr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
SOM08_12195
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
ALF
HU-CCDC81_euk_2
UBA_HYPK
Motif
Other DBs
NCBI-ProteinID:
WQB81777
LinkDB
All DBs
Position
2566434..2566706
Genome browser
AA seq
90 aa
AA seq
DB search
MNKTELVEHIAKHADISKAAATRALDSTIAAIRTTLKKGGTVSLVGFGSFGVSKRPARKG
RNPRTGAEIKIKAAKVPKFRPGKALKDAVN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaaaaccgaactcgtcgaacacatcgccaagcacgccgacatctccaaggccgct
gcgacgcgtgctctcgactccaccatcgccgccatccgcaccacgctcaagaagggcggc
accgtttccctggtgggcttcggctcgttcggcgtgagcaaacgtcccgctcgcaagggc
cgcaacccgcgcaccggcgccgagattaaaatcaaggccgccaaggtgccgaagttccgc
cccggcaaggcactgaaggacgcggtcaactga
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