KEGG   Hydrogenophaga sp. SNF1: SOM08_12195
Entry
SOM08_12195       CDS       T10669                                 
Name
(GenBank) HU family DNA-binding protein
  KO
K03530  DNA-binding protein HU-beta
Organism
hydr  Hydrogenophaga sp. SNF1
Brite
KEGG Orthology (KO) [BR:hydr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hydr03032]
    SOM08_12195
   03036 Chromosome and associated proteins [BR:hydr03036]
    SOM08_12195
   03400 DNA repair and recombination proteins [BR:hydr03400]
    SOM08_12195
DNA replication proteins [BR:hydr03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    SOM08_12195
Chromosome and associated proteins [BR:hydr03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    SOM08_12195
DNA repair and recombination proteins [BR:hydr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      SOM08_12195
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 ALF HU-CCDC81_euk_2 UBA_HYPK
Other DBs
NCBI-ProteinID: WQB81777
LinkDB
Position
2566434..2566706
AA seq 90 aa
MNKTELVEHIAKHADISKAAATRALDSTIAAIRTTLKKGGTVSLVGFGSFGVSKRPARKG
RNPRTGAEIKIKAAKVPKFRPGKALKDAVN
NT seq 273 nt   +upstreamnt  +downstreamnt
gtgaacaaaaccgaactcgtcgaacacatcgccaagcacgccgacatctccaaggccgct
gcgacgcgtgctctcgactccaccatcgccgccatccgcaccacgctcaagaagggcggc
accgtttccctggtgggcttcggctcgttcggcgtgagcaaacgtcccgctcgcaagggc
cgcaacccgcgcaccggcgccgagattaaaatcaaggccgccaaggtgccgaagttccgc
cccggcaaggcactgaaggacgcggtcaactga

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