Hydrogenophaga sp. SNF1: SOM08_15690
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Entry
SOM08_15690 CDS
T10669
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hydr Hydrogenophaga sp. SNF1
Pathway
hydr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hydr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOM08_15690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hydr03019
]
SOM08_15690
Enzymes [BR:
hydr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SOM08_15690
Messenger RNA biogenesis [BR:
hydr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SOM08_15690
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WQB82433
LinkDB
All DBs
Position
3281617..3283365
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AA seq
582 aa
AA seq
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MTFEELNLAPAIVQAVHEHGYHTPTPIQVEAVPAVLAGRDLLAGAQTGTGKTAAFTLPML
QRLSQGQRPANRFGGIGIRALVLTPTRELAAQVEESVRVYGKHVDLSSTVVFGGVGMNPQ
IDAMKRGVDILVATPGRLLDLQQQGFLDLSAVQILVLDEADRMLDMGFIHDVKKVLALLP
QSKQSLLFSATFSDEIRDLAQGLLKDPQHIQVTPRNTTVQRITQVIHPVGRGKKKSLLVH
IIQLHNWSQVLVFTRTKFGANNVADYLNKNGITAMALHGNKSQGARTQALAGFKSGEIRA
LVATDIAARGIDIDELPHVVNYDIPNICEDYVHRIGRTGRAGREGQAVNLVSLDEEGFMM
EIERFTKQQIPVEMFAEYMPEPGEKAEPIAMGRQTLWGGAGKPPSRDVMAAAAKAARQEM
VQRIREKKSSEGQGQGQGRGGRGQGDGQPRGQGQGQKAKGPRPQGNGQGGQHQGQGGGGQ
GHGQQRQRPPRGDRPPRAEGEEGYERQPGPNAHLGSLRIREPRPRQANPNGQPDPLRTGI
DAMRTSNRFKKKNNNKKGGGGGQRGEGNVDPLRTNYGRIGNN
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgaagaattgaacctggccccggccatcgtgcaagccgtgcacgagcacggg
taccacacgcccacccccatccaggtggaggccgttccggccgtgctggcgggccgcgac
ctgctcgccggcgcccagaccggcaccggcaagaccgccgccttcacgctgcccatgctg
cagcgcctctcccagggccagcgcccggccaaccgcttcggcggcatcggcatccgcgcc
ctggtgctcacgcccacgcgcgaactcgccgcccaggtcgaggaatcggtgcgcgtctac
ggcaagcacgtggacctgtcgtccaccgtggtgttcggcggcgtgggcatgaacccccag
atcgatgccatgaagcgcggcgtggacatcctggtggccacgccgggccgcctgctcgac
ctgcagcagcagggcttcctcgacctgtcggccgtgcagatcctcgtgctcgatgaggcc
gaccgcatgctcgacatgggcttcatccacgacgtgaagaaggtgctggccctgctgccc
cagagcaagcagagcctgttgttctccgccaccttcagcgacgaaatccgcgacctggcc
caaggcctgctgaaggacccgcagcacatccaggtcacgccgcgcaacaccacggtgcag
cgcatcacccaggtgatccacccggtgggccggggcaagaagaagtcgctgctggtgcac
atcatccagctgcacaactggagccaggtgctggtcttcacccgcaccaagttcggcgcc
aacaacgtggccgactacctcaacaagaatggcatcacggccatggcgctgcacggcaac
aagagccagggcgcgcgcacccaggcactggccggcttcaagagcggcgagatccgtgcc
ctggtggccaccgacatcgccgcgcgcggcatcgacatcgatgagctgccgcacgtcgtc
aactacgacatccccaacatctgcgaagactacgtgcaccgcatcggccgcaccggccgc
gcgggccgcgaaggccaggcggtcaacctcgtgagcctggacgaagaaggtttcatgatg
gagatcgagcgcttcaccaagcagcagatcccggtggagatgttcgccgagtacatgccc
gagcccggcgagaaggccgagcccatcgccatgggccgccagaccctctggggcggcgcg
ggcaagccgcccagccgcgacgtgatggccgccgcggccaaggccgcgcgccaggagatg
gtgcagcgcatccgcgagaagaagtccagcgaaggtcagggccagggccaaggccgcggt
ggccgcggccagggcgatggccagccgcgtggccagggccaggggcaaaaagccaagggc
ccgcgcccgcagggtaacggccagggcggtcagcaccaaggccagggtggcggcggtcag
ggccatggtcagcagcgccagcgcccgccgcgcggcgatcgtccgccgcgcgccgagggc
gaggaaggctacgagcgccagccgggccccaacgcccacctgggcagcctgcgcatccgc
gagccgcgcccgcgccaggccaacccgaacggccagcccgacccgctgcgcaccggcatc
gacgccatgcgcaccagcaaccggttcaaaaagaagaacaacaacaagaagggtggcggt
ggcggccagcgcggcgaaggcaacgtcgatccgctgcgcaccaactacggccgcatcggc
aacaactag
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