Hydrogenophaga sp. SNF1: SOM08_17300
Help
Entry
SOM08_17300 CDS
T10669
Name
(GenBank) sigma 54-interacting transcriptional regulator
KO
K07715
two-component system, NtrC family, response regulator GlrR
Organism
hydr Hydrogenophaga sp. SNF1
Pathway
hydr02020
Two-component system
hydr02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
hydr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SOM08_17300
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SOM08_17300
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
hydr02022
]
SOM08_17300
Two-component system [BR:
hydr02022
]
NtrC family
GlrK-GlrR (amino sugar metabolism)
SOM08_17300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
AAA_lid_14
Sigma54_activ_2
AAA_5
AAA_16
FleQ
AAA
AAA_2
HTH_8
MCM
AAA_3
AAA_30
IstB_IS21
nSTAND6
Glycos_transf_1
nSTAND3
DUF815
TIP49
NACHT
TNFAIP8
TsaE
Motif
Other DBs
NCBI-ProteinID:
WQB82733
LinkDB
All DBs
Position
3595313..3596722
Genome browser
AA seq
469 aa
AA seq
DB search
MSDVPHHRSRILVVDDDPDMLRLLSMRLGAAGYQVTAVGSAEAALAQLEIERPQLVLSDV
RLPGRDGLALFAEVRSRHPSLPVILLTAHGTIPDAVEATARGVFGYLTKPYEAKELLDKI
TQALALSTPAGPSRRADEAWRSDIVSRSNRMDDLLAEARMVAQSDASVLLRGDSGTGKEM
LARAIHKASARAGKPFVAVNCGAIPEALLESELFGHVKGAFTDAVANHKGLFQAADGGTL
LLDEIGDMPPALQVKLLRVLQERAVRPLGSSQSVPVDVRIVSATHRDLEVAMAEGQFRED
LYYRLNVVTLTLPTLAERREDIPLLANHFLSKLAAKYGKRSSGFAPEALKALTMATWPGN
VRQLYNVVEQVCALSTTPLVPLALVQRALRTPTMEVLSFAEARQRFERAYLVDLLKMTDG
NVADAARLAQRNRTEFYRLLQKHALTPGLFKSDGSGAPEAGGDEAVADT
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgtcccccaccaccggtcgcgcatcctggtcgtcgacgacgaccccgacatg
ctgcgcctgctgtccatgcgcctgggcgcggccggctaccaggtcacggcggtcggctcg
gccgaggccgcgctggcccagctggaaatcgagcgcccgcagctggtgctgtccgacgtg
cgcctgcccggccgcgacggcctggccctgttcgccgaggtgcgctcgcgccacccctcg
ctgccggtcatcctgctcaccgcgcacggcaccattcccgatgcggtggaggccaccgcg
cgcggcgtgttcggctacctcaccaagccctacgaggccaaggaactgctcgacaagatc
acccaggccctggcgctgagcacgcccgccggcccgtcgcggcgcgccgacgaggcttgg
cgcagcgacatcgtcagccgctccaaccgcatggacgacctgctggccgaggcgcgcatg
gtcgcgcagagcgacgccagcgtgctgttgcgcggcgactcgggcaccggcaaggaaatg
ctggcgcgcgccatccacaaggccagcgcgcgcgccggcaagcccttcgtggcggtcaac
tgcggcgccatcccggaggccctgctcgagtccgagctgttcggccacgtcaagggcgcc
ttcaccgacgcggtggccaaccacaagggcctgttccaggccgccgacggcggcaccctg
ctgctcgacgagatcggcgacatgccacccgccctgcaggtcaagctgctgcgcgtgctg
caggagcgcgccgtgcgcccgctgggctccagccagtcggtgccggtggacgtgcgcatc
gtctcggccacgcaccgcgacctggaggtcgccatggccgagggccagttccgcgaagac
ctgtactaccgcctcaacgtggtcacgctcaccctgcccacgctggccgagcggcgcgag
gacatcccgctgctggccaatcacttcctctccaagctggcggccaagtacggcaagcgc
agctcgggcttcgcgcccgaggcgctcaaggccctgaccatggccacctggcccggcaac
gtgcgccagctctacaacgtggtcgagcaggtctgcgccctgtccaccacgccgctggtg
ccgctggccctggtgcagcgcgcgctgcgcacgcccaccatggaggtgctgagctttgcc
gaggcgcgccagcgcttcgaacgcgcctacctggtcgacctgctcaagatgaccgacggc
aatgtcgccgacgcggcccgcctggcccagcgcaaccgcacggagttctatcgcctgctg
cagaagcacgcgctcaccccgggcctgttcaagagcgacggctccggcgcccccgaggcc
gggggtgacgaggctgtcgccgatacgtga
DBGET
integrated database retrieval system
