Hydrogenophaga sp. SNF1: SOM08_17320
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Entry
SOM08_17320 CDS
T10669
Name
(GenBank) type I secretion system permease/ATPase
KO
K11004
ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
Organism
hydr Hydrogenophaga sp. SNF1
Pathway
hydr02010
ABC transporters
hydr03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
hydr00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
SOM08_17320
03070 Bacterial secretion system
SOM08_17320
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hydr02000
]
SOM08_17320
02044 Secretion system [BR:
hydr02044
]
SOM08_17320
Transporters [BR:
hydr02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
SOM08_17320
Secretion system [BR:
hydr02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
SOM08_17320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
Peptidase_C39
SMC_N
ABC_ATPase
AAA_16
AAA_30
AAA_29
AAA_22
NB-ARC
DUF87
KAP_NTPase
Motif
Other DBs
NCBI-ProteinID:
WQB82737
LinkDB
All DBs
Position
complement(3601867..3604107)
Genome browser
AA seq
746 aa
AA seq
DB search
MSDPTLEAPDASGPARAEGAPPLPPRRATEQDSGIACLVMIARLHGVAADPDQIAHEFAH
DGRALDAQGLLLAARKLGLVAKRVRVDPVRLAKTPLPAIGIGASRASSAQHGEPCKGATG
DTSFFLLARIDEGRALIQSPTVGRPESLSLDALRAQWSGELILFTSRASIAGDMAKFDFT
WFIPAVVKYRRLLLEVLGVSFALQLFALITPLFFQVVMDKVLVHRGYTTLDVIAIAFAVV
VVFEVMLGGLRSFVFAHTTSRIDVELGARLFRHLLGLPLQYFQARRVGDSVARVRELENI
RAFLTGNALTVVLDLLFSIVFLAVMAYYSGWLTLIVLASLPCYVLVTAVCTPILRARLHE
KFNRGAENQAFLVETISGIDTVKAMAVEPQWTRRWDQQLAGYVSASFRTATIGTLANSGV
TLISKAVTVLTLYFGARFVIEGDLSVGQLIAFNMLAGQVAQPVMRLANLWTDFQQTGISV
QRLGDILNARTEVSGQKAALPPLAGRVTFEGVHFRYRPDGPEVLSDLSLDIAPGTVVGVV
GRSGSGKSTLTKLVQRLYAPERGRVLVDGIDLLMADASSLRRQVGVVLQENVLFARSVRD
NIALADPGAPLEAVVRAARLAGAHEFIAELPEGYDTMVGEHGSTLSGGQRQRIAIARALM
TNPRILILDEATSALDYESERIVQQNMQRIAQGRTVIIVAHRLSAVRDAHRIVVMERGRI
VESATHAELLARPGSRYGQLWRLQQA
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacccgacgctggaggcgccggacgcctcggggcccgcgcgcgcggagggcgcg
ccgccgctgccgccaaggcgcgccaccgagcaggacagtggcatcgcctgcctggtgatg
atcgcccgactgcatggcgtggcggcggacccggaccagatcgcgcacgagttcgcgcac
gatggccgtgcactggacgcgcagggcctgctgttggctgcgaggaaactggggctggtg
gccaagcgcgtgcgcgtggatccggtgcggctggcgaagacgcccttgccggcgatcggg
atcggtgcgtcgcgggccagcagtgcgcagcacggtgaaccgtgcaagggcgccaccggc
gacaccagttttttcctcctcgcccgcatcgacgaaggccgcgccctgatccagtctccc
actgttggccggccggaatccctcagcctcgacgccctgcgggcccagtggtccggcgaa
ctgatcctcttcacctcgcgcgcctccatcgcgggcgacatggcgaagttcgatttcacc
tggttcattcccgccgtggtgaagtaccgccgcctgctgctggaggtgctgggcgtgagt
ttcgcgctgcagttgttcgcgctcattacgccgctgtttttccaggtggtgatggacaag
gtgctggttcaccgcggctacaccaccttggacgtgatcgccatcgccttcgcggtggtg
gtggtattcgaggtgatgctgggcggcttgcgcagcttcgtattcgcgcacaccaccagt
cgcatagacgtggagctgggcgcccgtctgttccggcacctgctgggcctgccgctgcag
tacttccaggcccggcgcgtgggcgattcggtggcgcgcgtgcgggagctggaaaacatc
cgcgccttcctcacgggcaacgcgctcacggtggtgctcgacctgctgttttccatcgtc
ttcctggcggtgatggcgtactacagcggctggctcacgctgatcgtgctggcctcgctg
ccgtgttacgtgctggtgacggcggtgtgcacgcccatcctgcgcgctcgcctgcacgag
aagttcaaccgcggtgccgagaaccaggcctttctggtggagaccatcagcggcatcgac
acggtgaaggccatggcggtggagccgcagtggacgcgccgctgggaccagcagctcgcg
ggctacgtgtcggccagtttccgaacggccaccatcggcaccttggccaacagcggggtc
acgttgatttccaaggcggtgacggtgctcacgctgtatttcggtgcgcgcttcgtcatc
gagggcgatctgtccgtggggcagctgatcgccttcaacatgctggcgggccaggtggcg
cagccggtgatgcgcctggccaacctgtggaccgacttccagcagaccggcatttccgtg
cagcgcctgggcgacatcctgaacgctcgcaccgaggtgtcgggccagaaggcggcgctg
ccgcccctggcggggcgggtcacgttcgagggggtgcacttccgctaccggcccgatggg
cccgaggtgttgagcgacctgtcgctggacatcgcacccggcaccgtggtgggggtggtg
gggcgttcgggttccggcaagagcaccctgaccaagctggtgcagcgcctgtacgcgccc
gagcgcgggcgggtcctggtggatggcatcgatctgctgatggccgatgcgagttccctg
cgccgccaggtgggtgtggtgctgcaggagaacgtgctgttcgcgcgcagcgtgcgcgac
aacatcgccctggccgacccgggcgcgccgctggaagcggtggtgcgcgccgctcgcctg
gcgggggcgcatgagttcattgccgagcttcccgagggctacgacacgatggtgggtgag
catggttccaccctgtccggtgggcagcggcagcgcattgcgatcgcgcgcgcgctcatg
accaacccgcgcatcctcatcctggacgaggccacgagtgcgctggactatgaaagcgag
cgcatcgtgcagcagaacatgcagcgcattgcccaggggcgcacggtgatcatcgtggcg
caccggctgagcgcggtgcgcgacgcgcatcgaatcgtggtgatggagcgcggtcgcatc
gtggagtcggccacgcacgccgagctgctggcgcgcccgggcagccgttacggccagttg
tggcgtctgcagcaggcgtga
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