Hydrogenophaga sp. SNF1: SOM08_18215
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Entry
SOM08_18215 CDS
T10669
Name
(GenBank) helix-turn-helix transcriptional regulator
KO
K19666
LuxR family transcriptional regulator, quorum-sensing system regulator SolR
Organism
hydr Hydrogenophaga sp. SNF1
Pathway
hydr02020
Two-component system
hydr02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
hydr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SOM08_18215
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SOM08_18215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hydr03000
]
SOM08_18215
Transcription factors [BR:
hydr03000
]
Prokaryotic type
Helix-turn-helix
LuxR family
SOM08_18215
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GerE
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
HTH_28
HTH_23
HTH_40
HTH_10
Motif
Other DBs
NCBI-ProteinID:
WQB82910
LinkDB
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Position
complement(3798640..3799308)
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AA seq
222 aa
AA seq
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MTLPVNFDSVGVDSILADWLMALREQGVEVVMVLGPDPLGPRERRELLAVHPPRMLAPAE
ALAASVDFGASWRESDAPLVAWQDISKSAAEHSSRWRRLFLAHGQQSLVRVAFPLPAGRA
FECFMFSPRAYDSRLEAATLAWSVFNVWPMLKRALAEQRVSLSPRELESLNLAFEGLTAR
ETALRMDCSERTVNYHLANAMAKLQTDNKLGAVQRACWLGLI
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atgacactccctgtcaactttgacagtgtcggcgtcgacagcatcctggccgactggctg
atggcgctgcgcgaacagggggtggaagtggtgatggtgctgggcccggaccccctgggc
ccgcgcgagcgccgcgagctgctggccgtgcatcccccccgcatgctggcacccgccgag
gccttggcggccagcgtggattttggcgcgagctggcgtgaaagcgacgcgcccctggtg
gcctggcaggatatttccaagtcggccgccgagcattccagtcgctggcgtcgcctgttt
ctggcccacgggcagcagagcctggtgcgggtggccttccccttgccggctggccgggcc
ttcgaatgtttcatgttcagcccgcgcgcctacgacagccgcctggaagccgccacgctg
gcctggtcggtcttcaatgtctggcccatgctcaagcgcgccctggcggagcagcgcgtg
agcctgagcccgcgcgagctggaaagcctcaacctggccttcgagggcctgaccgcgcgc
gaaaccgcgctgcgcatggactgctcggagcgcaccgtgaactaccatctggccaacgcc
atggccaagctgcagaccgacaacaagctcggcgccgtgcagcgggcctgctggcttggc
ctgatttga
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