Hydrogenophaga sp. SNF1: SOM08_20495
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Entry
SOM08_20495 CDS
T10669
Name
(GenBank) efflux RND transporter permease subunit
KO
K07789
multidrug efflux pump
Organism
hydr Hydrogenophaga sp. SNF1
Pathway
hydr02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
hydr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SOM08_20495
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hydr02000
]
SOM08_20495
Transporters [BR:
hydr02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
SOM08_20495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
SecD_SecF_C
Motif
Other DBs
NCBI-ProteinID:
WQB83346
LinkDB
All DBs
Position
complement(4282582..4285725)
Genome browser
AA seq
1047 aa
AA seq
DB search
MHALARFFIRRPMGSAMLAAAIVLTGLLALRLLPVAPLPRVDFPVIQVRASLPGASPESM
ASTVAAPLERALGSIAGVTSIRSSSNQGSTGVTLQFDLNRDIDDAAREVQAAINAVRGQL
PSGMVGNPSFVKVNPSQAPIMALALSSPRLPPSALYDNASTVLAQKLAQVAGVGEVTVDG
SSLPAVRVQVQPQALAHRGLSLDDVRRAIADANAWRPVGAVERDASRWQIALPAPLRTAA
DFSTLVVRNEGGALVRLSDVAEVSDSVENRYTAGYHNNRPAVVLLVSRRPGANIVQTVDA
IHAQLPQLRALLPADTQLSVVMDRSPGIRATLREGRFTLVLSCLLVMAVVWAFLGSLRTA
LIPALALPVSLVGALAAMWWLGFSLNNLSVMALIVAAGLVVDDAIVVLENIQRHLERARA
AQAAAGQREIGRRTVWRAAFTGAGEVGFTLLAMNGALIVVFVSTLFMGGVVERLFREFSL
TLVAAMLISLAVSVTLTPALCAHGLPAGPRTRAPGPLARLIATALADVQAGYARSLAFAL
RHHWLTLLLLVGTVALNVWLYVAIPKGMLPQQDTGQLSGFVRGDDGFSFQGMQPKVEAYR
RLLVADPAVADVTGVSGGRTGTSNSWFRIRLKPLAERGEPASAVVARLRAAAPPIAGGIL
FVSVDQDIRLASGGGDGEYLFVMRSDSLADLRQWTRPVGEALRALPELAGVDFGAGEDAQ
QVVLQVDREAARRLGVGMDTVTTALNNAFSQRQVATLYDALNQYRVVMEADPRGNSEPSA
LEEVQLLNGAGQRVPLSAIATWRYGLTRDRVQHDAQFASAGISYGLAPGVSLQQAQAAIE
RAVNGLLLPTSLSTGERAGDPNSLQATLKRQPWLILAVLVTVYLVLGMLYESLLHPLTIL
STLPSAGVGALLALRISDTEFSLIALLGLFLLIGVVMKNAILMIDFALAAQRRRGLAPRD
AIHEAALRRLRPILMTNLAALLGAVPLVLGLGEGSELRRPLGIAIIGGLAMSQLLTLYTT
PVVYLMLERLRARLSPLPAGASAATPA
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgcacgcgctggcccgcttcttcatccgccgccccatgggcagcgcgatgctggccgcc
gccatcgtgctcactggcctgctggccctgcggctgctgccggtggcgccgctgccgcgt
gtggacttccccgtcatccaggtgcgcgccagcctgcccggcgccagccccgagagcatg
gcgtccaccgtggccgcgccgctggagcgtgcgctgggcagcatcgccggcgtcaccagc
atccgctccagcagcaaccagggcagcaccggcgtgacgctgcagttcgacctgaaccgc
gacatcgacgacgcggcgcgcgaggtgcaggccgccatcaacgcggtgcgcgggcaattg
ccttccggcatggtgggcaatcccagcttcgtgaaggtcaatccctcgcaggcgcccatc
atggcgctggccctgtcctcgccgcggctgcccccgtcggcgctgtacgacaacgcgtcc
accgtgctcgcgcagaagcttgcgcaggtggccggcgtgggcgaggtcacggtggacggt
tcctcgctgccggcggtgcgcgtgcaggtgcagccccaggcgctggcgcaccgcggcctg
tcgctggacgacgtgcgccgcgcgatcgccgacgccaacgcctggcggcccgtcggcgcg
gtggagcgcgacgcctcgcgctggcagatcgcgctgccggcgccgctgcgcacggcggcc
gatttttcgacgctggtggtgcgcaacgaaggcggcgcgctggtgcgcctgtccgacgtg
gccgaggtcagcgactcggtggagaaccgctacaccgccggctaccacaacaaccgcccc
gccgtggtgctgctggtgagccggcggccgggcgccaacatcgtgcagaccgtcgacgcc
atccacgcgcagctgccgcagctgcgcgccctgctgccggccgacacgcagctcagcgtg
gtgatggaccgctcgcccggcatccgcgccacgctgcgcgagggccgcttcaccctcgtc
ctgagctgcctgctggtgatggccgtggtctgggccttcctcggcagcctgcgcacggcg
ctcatccccgcgctggccctgccggtgtcgctggtcggcgcgctggcggccatgtggtgg
ctgggcttttcgctcaacaacctgtcggtgatggccttgatcgtggccgccggcctggtg
gtggacgacgccatcgtggtgctggagaacatccagcggcacctcgagcgcgcgcgcgcc
gcccaggccgccgccggccagcgcgagatcggccggcgcaccgtctggcgcgccgccttc
accggcgcgggcgaggtcggcttcaccctgctcgccatgaacggcgcgctgatcgtggtc
ttcgtctccaccctgttcatgggcggcgtggtggagcgcctgttccgcgagttctccctc
accctggtggcggccatgctgatctcgctggccgtgtcggtcacgctcacgccggcgctg
tgtgcgcatggcctgccggccggcccgcgcacgcgcgcgccgggcccgctggcgcgcctc
atcgccaccgcgctggccgacgtgcaggccggctacgcgcgcagcctggccttcgcgctg
cgccaccactggctcaccctgctgctgctcgtgggcacggtggcgctcaacgtctggctc
tacgtggccatccccaagggcatgctgccgcagcaggacaccggccagctcagcggcttc
gtgcgcggcgacgatggcttctccttccagggcatgcaacccaaggtggaggcctaccgc
cgcctgctggtggccgacccggccgtggccgacgtgaccggggtcagtggcgggcgcacc
ggcaccagcaactcctggttccgcatccgcctcaagcccctggccgagcgcggcgagccg
gcctcggccgtggtcgcgcgcctgcgcgccgccgccccgcccattgccggcggcatcctg
ttcgtgtcggtcgaccaggacatccggctggccagcggcggcggcgacggcgagtacctg
ttcgtcatgcgctccgactcgctggccgacctgcgccagtggacgcgcccggtgggcgag
gcgctgcgcgcgctgcccgaactggccggcgtggacttcggcgccggcgaggacgcgcag
caggtggtgctgcaggtggaccgcgaggccgcgcgccgcctgggcgtgggcatggacacg
gtgaccaccgcgctcaacaacgccttctcgcagcgccaggtggccacgctgtacgacgcg
ctgaaccagtaccgcgtggtcatggaggccgacccgcgcggcaacagcgagccgagcgcg
ctggaggaggtgcagctgctcaacggcgcgggccagcgcgtgccgctcagcgccatcgcc
acctggcgctatggcctcacgcgcgaccgcgtgcagcacgacgcgcagttcgcctccgcc
ggcatcagctacggcctggcgccgggcgtgagcctgcagcaggcgcaggcggccatcgag
cgcgccgtcaacggcctgctgttgcccaccagcctctccaccggcgagcgcgcgggcgac
ccgaacagcctgcaggccacgctcaagcgccagccctggctgatcctggccgtgctggtc
accgtctacctggtgctgggcatgctctacgaaagcctgttgcacccgctgaccatcctg
tccaccctgccctcggccggcgtgggcgcgctgctggcgctgcggatctcggacaccgag
ttcagcctgatcgcgttgctgggcctgttcctgctgatcggcgtggtgatgaagaacgcc
atattgatgatcgacttcgccctcgccgcgcagcgccggcgcggcctggcgccgcgcgac
gccatccacgaggccgcgctgcgccgcctgcgccccattctcatgaccaatctggccgcg
ctgctgggcgcggtgccgctggtgctgggcctgggcgaaggctcggaactgcgccgcccg
ctgggcatcgccatcatcggcggcctggccatgagccagctgctcacgctctacaccacg
ccggtggtctacctgatgctggaacggctgcgcgcgcggctgagccccttgcccgcgggc
gcgtccgccgccacgcccgcctga
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