Hydrogenophaga sp. SNF1: SOM08_21700
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Entry
SOM08_21700 CDS
T10669
Name
(GenBank) long-chain-fatty-acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
hydr Hydrogenophaga sp. SNF1
Pathway
hydr00061
Fatty acid biosynthesis
hydr00071
Fatty acid degradation
hydr01100
Metabolic pathways
hydr01212
Fatty acid metabolism
hydr02024
Quorum sensing
hydr04146
Peroxisome
Module
hydr_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
hydr00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
SOM08_21700
00071 Fatty acid degradation
SOM08_21700
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
SOM08_21700
09145 Cellular community - prokaryotes
02024 Quorum sensing
SOM08_21700
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
hydr01004
]
SOM08_21700
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hydr04147
]
SOM08_21700
Enzymes [BR:
hydr01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
SOM08_21700
Lipid biosynthesis proteins [BR:
hydr01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
SOM08_21700
Exosome [BR:
hydr04147
]
Exosomal proteins
Exosomal proteins of breast milk
SOM08_21700
Exosomal proteins of breast cancer cells
SOM08_21700
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
Host_attach
Motif
Other DBs
NCBI-ProteinID:
WQB83581
LinkDB
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Position
complement(4510189..4511874)
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AA seq
561 aa
AA seq
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MPTATADRPWLAAYPEGVPADIDVNQYPSLVHLMEESFRRFGDRTAYSFMGKDVSFAQTD
AASQSVAAYLQGLGLVKGDRVAIMMPNVPQYPVVVAGILRAGLVVVNVNPLYTARELEHQ
LKDSGAKAIVIIENFARTLEQCIAATPVKHVVLAAMGDMLGLLKGGLVNYVVRKVKKMVP
AFNLPQAVRFNDALARGARGAFKKPEIKADDMAVLQYTGGTTGVSKGAVLLHRNIIANVL
QSEAWNDPVMKKVPAGEQPTSVCALPLYHIFAFTVNMMLSLRVGGKTILIPNPRDLPAVL
KELSKHRFHSFPAVNTLFNGLANHPDFNTVDWSHLKVSVGGGMAVQGAVAKRWLEKTGCP
ICEGYGLSETSPSATCNPTTSTEYTGTIGVPLPNTRLKCLDDEGHEVPVGQPGEIAIHGP
QVMAGYWQRPDETAKVMTPDGFFKSGDIGIMDERGYFKIVDRKKDMVLVSGFNVYPNEVE
DVVAQLPGVLECAVVGVPDDKTGEAVKLVIVKKDPSLTEEQVREFCRANLTGYKQPRVIE
FRTDLPKTPVGKILRRELRDK
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgccgaccgccaccgccgaccgtccttggctcgccgcttaccccgaaggggtgcccgcc
gacatcgacgtgaaccagtacccctcgctggtgcacctgatggaggagagcttccggcgc
ttcggcgatcggaccgcctacagcttcatgggcaaggacgtgagcttcgcgcagaccgac
gcggcctctcagtccgtggcggcctacctgcagggcctgggcctcgtgaagggcgaccgc
gtggcgatcatgatgcccaacgtaccgcagtacccggtggtcgtcgcgggcatcctgcgc
gcgggcctggtggtggtgaacgtgaacccgctgtacaccgcgcgcgaactggagcaccag
ctcaaggactcgggcgccaaggccatcgtcatcatcgagaacttcgcccgcacgctggaa
cagtgcatcgcggccacgccggtgaagcacgtggtgcttgcggccatgggcgacatgctg
ggcttgctcaagggtggcctggtgaactacgtggtgcgcaaggtcaagaagatggtgccg
gccttcaacctgccgcaggccgtgcgcttcaacgacgccctcgcgcgcggcgcgcgcggc
gcgttcaagaagcccgagatcaaggccgacgacatggccgtgctgcagtacaccggcggc
accacgggcgtgagcaaaggcgcggtgctcctgcaccgcaacatcatcgccaacgtgctg
cagtccgaggcctggaacgacccggtgatgaagaaggtcccggccggcgagcagcccacc
agcgtgtgcgcgctgccgctgtaccacatcttcgcgttcaccgtgaacatgatgctgagc
ctgcgggtgggcggcaaaaccatcctcatccccaacccgcgcgacctgccggcggtgctc
aaggagttgagcaagcaccgcttccacagctttcccgcggtgaacacgctgttcaacggc
ctggccaatcaccccgacttcaacaccgtggactggagccacctgaaggtttcggtgggc
ggcggcatggcggtgcagggcgcggtggccaagcgctggctcgagaaaaccggctgcccg
atctgcgagggctacggcctgtccgaaaccagcccctcggccacctgcaaccccaccacc
agcaccgagtacaccggcaccatcggcgtgcccctgcccaatacgcgcctgaagtgcctg
gacgacgagggccacgaggtgcccgtgggccaacccggcgagattgcgatccacggcccg
caggtgatggcgggctactggcagcgcccggatgagaccgccaaggtcatgacgcccgac
ggcttcttcaagagtggcgacatcgggatcatggacgagcgcggctacttcaagatcgtg
gaccgcaagaaggacatggtgctggtcagcggtttcaacgtctacccgaacgaggtcgag
gacgtggtcgcgcagctgcccggcgtgctggagtgcgccgtggtgggcgtgccggacgac
aagaccggcgaagccgtgaagctggtgatcgtgaagaaggacccgtcgctcaccgaagag
caggtgcgcgagttctgccgcgccaacctcacgggctacaagcagccgcgcgtgatcgag
ttccgcaccgatctgcccaagacgccggtgggcaagatcctgcgccgcgagctgcgcgac
aagtga
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