Hymenobacter sp. DG25A: AM218_01990
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Entry
AM218_01990 CDS
T04064
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hye
Hymenobacter sp. DG25A
Pathway
hye03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hye00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AM218_01990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hye03021
]
AM218_01990
03019 Messenger RNA biogenesis [BR:
hye03019
]
AM218_01990
Transcription machinery [BR:
hye03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AM218_01990
Messenger RNA biogenesis [BR:
hye03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AM218_01990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
S1CSD-TOTE-2
ATPase_2
AAA_25
AAA_22
NACHT
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ALD20225
LinkDB
All DBs
Position
464708..466759
Genome browser
AA seq
683 aa
AA seq
DB search
MYTIDELKDRLLSELKEIAEELKVGNFKKLSKQDLVYKILDQQAVTPLEQLPQKTKPSSP
KASKSAPAAVVAAEVEEAPAAMQPVEAPAVEAVSGTESTNEATQIDATVRPIKPYQRPER
RARGQERAPRGVQALNGDLVPVDAVALDVPDSVVLPEAPAVVSAPAEPAAETLVTEVVEA
PAVAAVAPAAPGIPMPSPGAVIIPQPGRGDRLRDVPRDRDRGRDQQQGPREFRTDAPRGE
FSREATREQRPLRDDQQPRPLRDREQRDQQRREDRFARDQQRREERNRPVGEVAAPGQAP
SPNQPQRTRPDFDITIPGEGTLEMMPDGGYGFLRSPFYNYLASPDDIYVAPQQVKQFALK
AGDTVKCTIRPPREGEKYYALVSVELVNGRTVDEVRDRVPFNHLTPLFAEERLKLSTKSN
QYSTRILDLFAPIGKGQRGLIVAQPKTGKTVLLQEIANAISENHPEVYLIILLIDERPEE
VTDMARSVKAEVLSSTFDETADRHVKIASIALDKAKRLVECGHDVVILLDSITRLARAYN
TVQPASGKILSGGVDANALHKPKRFFGAARNVEDGGSLTIIATALIDTGSKMDEVIFEEF
KGTGNMELQLDRKLANRRIFPAIDVPASGTRREDLLMSKDELSRIWVLRKFMSDMTPAEA
MEFLKDRMKGTRDNDEFLVSMNG
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtacactattgacgagttaaaagaccgcctgctttctgagcttaaagaaattgctgaa
gagttgaaggttggaaactttaagaaactcagcaagcaggatctagtctataagattcta
gatcagcaagctgtaacgccgctggagcaactcccgcaaaagaccaagccaagcagccca
aaagcaagcaaaagtgctcctgccgcagttgtggcagcagaagtagaggaagccccggcc
gctatgcagccggtagaagcgcccgccgtagaggctgtttccggcacggaatctaccaat
gaagccactcagattgatgccaccgttcgccccattaagccctaccagcggccggagcgc
cgggctcgtgggcaagagcgcgccccgcgtggtgtgcaggccctcaatggtgacttggtt
cctgtagatgccgtggctctggacgtgccggattccgttgtgctgccggaagctccggct
gtagtatcggctccggctgagccggccgccgaaacattggtaacagaggtagtagaagcc
ccggcagtagccgccgtagcgccagcagcaccggggattcctatgccttcgccgggcgcg
gtgattattccccagcctggccgcggcgaccggctgcgcgatgttccccgcgaccgggac
cggggccgtgaccagcagcagggcccccgcgagttccgcaccgatgccccgcgtggagaa
ttctcccgcgaggctacccgtgagcagcgccccttgcgcgacgatcagcagccacgcccc
ctgcgcgaccgggagcagcgcgaccagcagcgccgcgaagaccggtttgcccgggaccag
cagcgccgcgaggagcgcaaccgcccggtaggagaggtagccgctccgggccaggccccc
agcccaaaccagcctcagcgcacccgtcccgatttcgatatcaccatcccgggtgaaggt
accctggaaatgatgcccgatggtggctacggcttcctgcgcagtcctttctataactac
ctcgcctcgcccgatgatatttacgtggccccgcagcaggtaaagcagtttgccctgaaa
gccggcgacacggtgaaatgcaccattcgtccgccccgcgaaggtgaaaaatactacgcg
ctggtgagcgtggagctggtcaatggccgcacagtagatgaagtgcgggaccgggtaccg
ttcaaccacctcacgccgctttttgctgaggagcgcctgaagctttccacgaaatccaac
cagtatagcacccgcattctggacctgtttgcgcccatcggcaaaggccagcgtggtttg
attgtggcccagcccaaaactggtaaaacggtgttgctgcaggaaattgccaacgccatt
tccgagaatcaccccgaagtttatctcattattctgctgattgatgagcgcccggaagaa
gtaacggatatggcccgctcggtaaaagccgaggtgctcagctccaccttcgacgaaacc
gccgaccgccacgtgaaaattgccagcattgcgctggataaggccaagcgcctggtagaa
tgcggccacgatgtggtaattctgctggactccattacccgcctggcccgagcctataac
acggtgcagccggcttccggtaaaatcctctcgggtggtgttgatgccaacgccctgcac
aagcctaagcgcttctttggcgcggcccgcaacgtggaagacggcggctcgctcaccatc
attgccacggccctgattgataccggctctaaaatggacgaggtaatcttcgaggaattc
aaaggcaccggcaacatggaactgcaactggaccgcaagctggccaaccgccgcatcttc
cccgccatcgatgtacctgcttccggcacccgccgcgaagacctgctgatgagcaaagac
gagctcagccgcatctgggtactccgcaagttcatgtcggacatgacgcccgccgaggcc
atggaattcctgaaggaccggatgaaaggcacccgcgacaacgacgagttcctggtgtcc
atgaatggctaa
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