Hymenobacter sp. DG25A: AM218_05155
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Entry
AM218_05155 CDS
T04064
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hye
Hymenobacter sp. DG25A
Pathway
hye03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hye00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AM218_05155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hye03019
]
AM218_05155
03400 DNA repair and recombination proteins [BR:
hye03400
]
AM218_05155
Enzymes [BR:
hye01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AM218_05155
Messenger RNA biogenesis [BR:
hye03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AM218_05155
DNA repair and recombination proteins [BR:
hye03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AM218_05155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
GerE
HTH_11
zf-CXXC
HTH_24
Motif
Other DBs
NCBI-ProteinID:
ALD20720
UniProt:
A0A0M4HBV6
LinkDB
All DBs
Position
1196878..1199103
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AA seq
741 aa
AA seq
DB search
MLFTPQPLAPTLESARRVLKQYYGYDTFRPMQEDIIENIMAGRDTVVLMPTGGGKSVCFQ
VPAVVQEGVCIVVSPLIALMKDQVEALMANGIPAAYINSSVAQGEQSSIARDCQSGALKL
LYVSPEKLLSDGFLQFVQRLKVSMFAIDEAHCISSWGHDFRPEYTQLRVLREQFPNVPII
ALTATADRLTQRDIQQQLRLRDPQVFLSSFDRPNLNLMVRPGQNRVDGILDFLARHPDEP
GIIYCLSRKQCETLTQKIKAKGFRAGFYHAGMTPNQRASAQEGFLKDDLQVIVATIAFGM
GIDKSNVRWVMHYNLPKNIEGYYQEIGRAGRDGAPAAAVLFYSFADVMSLREMLTKENPQ
LTQLNLTKLERMQQFAEAAGCRRKVLLNYFGETLAEDCGNCDICRNPPTTFDGTLLAQKA
LSAVFRMRERASIGLLIDVLRGMRNQAVLMGGYDQIKTYGAGADLPYLDWYSYIHQMLND
GLFYIAYEDGYTLKITELGQQTLKGQRTVSMKKFQVTEKAEKPVRGKKAVGTAVAATPEA
RLFESLRALRKQIADEQGVPPYVIFTDTTLQEMATERPVTRVAMLAISGVGMKKFENYGE
VFIREILAQGGAPSPEDASEADDLPQEEAPARKPRAKREAGDTHEATLQLHRLGLSVEAI
AERRTLSPSTIRAHIESLYAKGAQIRLEEFLTTDEFAEIQTAIGQLGGAPLLRDLFDHLR
EKYDYSKLRMAMLYQKRLRGE
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgctatttactccccagcccctcgcacccacgctagaatctgcccgccgcgtcctcaag
caatactacggctacgataccttccggcccatgcaggaggatatcattgagaacattatg
gcggggcgggatacggtggtgctgatgccgacgggcggtggtaaatccgtctgctttcag
gtgccggccgtagtgcaggagggagtctgcattgtagtctcgccgctgattgccctgatg
aaggaccaggtagaagccctgatggccaacggcattccggcggcctacatcaacagcagc
gtggcccagggcgagcaaagcagtattgcccgcgactgtcagtccggggcgctgaagctg
ctctacgtcagcccggagaaactgctgtccgatggctttctgcagtttgtgcagcgcctg
aaggtgagcatgtttgccattgatgaagcgcactgcatttcgtcctggggtcacgatttc
cggccggagtacacccagctgcgcgtactgcgcgagcagttccctaacgtgcccatcatt
gccctcaccgccactgccgaccgcctcacgcagcgcgacattcagcagcagctgcgcctg
cgcgaccctcaggttttcctatcttccttcgatcggcccaatctgaacctgatggtgcgc
cccggccagaaccgggtagacggcatcctggatttcctggcccgccaccccgatgagccg
ggcatcatttactgcctctcgcgcaagcagtgcgaaaccctcacccagaaaatcaaggcc
aaaggcttccgcgccggcttctatcacgctggcatgacgcccaaccagcgcgccagcgcc
caggaaggcttcttgaaagatgatctgcaggtgattgtggcgaccattgccttcggcatg
ggcatcgataaaagcaatgtgcgctgggtgatgcactacaacctgcccaaaaacattgaa
ggctactaccaggaaataggccgcgccggccgcgacggagctccggccgcggccgtgctg
ttctacagctttgccgatgtaatgagcctgcgggaaatgctcaccaaggaaaacccgcag
ctcacccagctcaacctcaccaagctggagcgcatgcagcagtttgccgaggccgccggc
tgccgccgcaaagtcctgctcaactacttcggggaaaccctggccgaagactgcggcaac
tgcgacatctgccgcaacccacctaccaccttcgatggcacgctgctggcccaaaaagcc
ctgtcagcggtgtttcgcatgcgggagcgggcgtctattggcttgctgattgacgtgctg
cgcggcatgcgcaaccaggccgtgctcatgggcggctacgaccagattaaaacctacggc
gccggtgccgacctgccctacctggactggtacagctacatccaccagatgctgaacgat
ggcctgttctacattgcctatgaagacggctacacgctgaaaatcacggagctgggccag
caaaccctgaaaggccagcgcaccgtttccatgaagaaattccaggtgacggagaaggcc
gaaaagcccgtccgcggcaagaaagccgtgggtacggccgtagccgccacgcccgaagcg
cgcctgttcgaaagtctgcgcgccctgcgcaagcaaattgccgacgagcagggcgtgccg
ccctacgttatcttcaccgataccaccctgcaggaaatggccactgagcggcccgttacc
cgcgtggctatgctggctatttccggcgtgggcatgaagaagtttgaaaactacggcgag
gtattcatccgggaaattctggcgcagggcggcgcacccagccccgaggatgcttcagaa
gcggatgatttaccgcaagaagaagcgcctgcccgcaagccacgcgccaagcgagaagcc
ggcgacacccacgaagctactttgcagctgcaccgcttgggcttgagcgtggaggccatt
gccgagcgccgtactctgagccccagtactattcgcgcccacatcgagtcgttgtacgcc
aaaggcgcccagatccggctggaggagttcctcaccaccgatgagtttgccgaaatccag
acggccatcggtcagctgggcggcgctccgttgctgcgcgacctgttcgaccacctgcgg
gaaaaatacgactactccaagctgcgcatggccatgctgtatcagaaaagactgcgcgga
gagtaa
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