Hymenobacter sp. DG25A: AM218_14035
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Entry
AM218_14035 CDS
T04064
Name
(GenBank) recombinase RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hye
Hymenobacter sp. DG25A
Pathway
hye03410
Base excision repair
hye03430
Mismatch repair
hye03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hye00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AM218_14035
03430 Mismatch repair
AM218_14035
03440 Homologous recombination
AM218_14035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hye03400
]
AM218_14035
DNA repair and recombination proteins [BR:
hye03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AM218_14035
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AM218_14035
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AM218_14035
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ALD22122
UniProt:
A0A0M5JW88
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Position
complement(3267641..3269365)
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AA seq
574 aa
AA seq
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MQKRWIRKPAPDPEKVRHLADALRVNPSIVALLCQRDVCTFEEARAYFRPSLEELPDPLL
MRDMDRAVTRLQHALHAGEKVLVFGDYDVDGTTSVAVVYAYLHAFFGSERIDYYIPDRYK
EGYGISDAGIDFAADNGYALIIALDCGVKAVDKIAYANTKGVDFIICDHHLPGDELPAAI
AVLDPKRADCPYPFKELSGCGVGFKLMQAFCQHLGQEEAPLHELLDLLSVSIAADIVPIT
GENRTLAYHGLRLLNDAAHPQRPGLDALRDLAGLRESKLNISSLVFGFSPRINAAGRMGD
AKRAVSMLLAQSKEDAFEKASVVDKTNQDRRGFDTRITKEALDMIEADASMRDARSTVLY
NETWHKGVIGIVASRCLDKYYRPTIILTESNGKATGSARSVMGFDVHQAILECADLLDQF
GGHMYAAGLTLPVENVPAFQRRFEEVVSARITDEQLIPAVEIDGELDLSDITMSFYKLLC
QMEPFGPGNANPTFVSHGVHAQPDSARIVGTSHLKIVLTQDGHHSVDAIGFGLGDFLPQI
QQGRPFSVCYTVELNEYRGVKTLQLRLKDLRWEE
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaacgatggatccggaagcctgcgcccgaccctgaaaaggtccggcacctggcc
gacgccttgcgcgtcaatccttccattgtggccctgctgtgccagcgcgacgtatgcacc
tttgaggaagcccgcgcgtatttccgtccctccctggaggagctgccagaccccttgctg
atgcgcgacatggaccgcgccgtaacccgcctgcagcacgctctgcacgccggggagaaa
gtgctggttttcggcgactacgacgtggacgggactacctccgtggccgtggtgtatgcc
tatttgcacgcctttttcgggtcggagcgcatcgactactacattccggaccgctacaaa
gaaggctacggcatttcggacgccggcatcgactttgccgctgacaacggctacgccctg
attattgcgctggactgcggcgtgaaggccgtggataaaatagcctacgccaacaccaag
ggcgtcgacttcatcatttgcgaccaccacttgcccggtgatgagctgccggcggccata
gccgtgctggaccccaagcgcgccgactgcccgtatccgtttaaggagctttccggctgt
ggcgtgggctttaagctgatgcaggctttctgtcagcatctgggccaggaggaagctccg
ctgcacgagctgctggatttattgtcggtgagtattgcggcggatatcgtgcccattacc
ggcgagaaccgcacactggcttaccacggcctgcgcctgctcaacgacgccgcgcacccc
cagcgcccgggcctcgatgctctgcgggacctggccgggctgcgggaaagcaagctcaac
atcagcagcctggtctttggcttctcgccccgcattaacgcggccggccgcatgggcgac
gccaagcgcgcggtttctatgctgctggcccagagcaaggaagacgcctttgagaaggcc
agcgtggtagacaaaaccaaccaggaccgccgcggcttcgatacgcgcatcaccaaggaa
gctctggacatgattgaggccgacgccagcatgcgcgacgcccgctccacagtgctctac
aacgaaacctggcacaagggcgtcatcggaattgtggcttcccgctgcctcgataaatat
taccggcctaccatcatcctcaccgaaagcaacggtaaagccaccggctcggcccgctcc
gtaatggggtttgatgtgcaccaggccattctggaatgcgccgatttgctggaccagttt
ggcgggcacatgtacgcggccggcctcacgctgccggtagaaaacgtgcctgctttccag
cggcgctttgaggaagtcgtgtcggcgcgcattacggatgagcagctgattccggcggtg
gaaattgatggtgagctggacctgagcgacatcaccatgagcttctacaagctgctctgc
cagatggagcccttcggccccggcaatgccaatcccacctttgtgtcgcacggcgtacac
gcccagcctgactctgcgcggattgtggggacctcgcatttgaaaattgtgctcacgcag
gatggccaccacagcgtggatgccattggctttggcctgggcgacttcctgccccagatc
cagcagggccgcccgttcagcgtgtgctatacggtggagctgaacgagtaccgcggcgta
aaaactctgcagctgcgcctgaaagatttgcgctgggaagaatag
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