Ephemeroptericola cinctiostellae: DTO96_100014
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Entry
DTO96_100014 CDS
T05560
Symbol
rhlE_1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hyf
Ephemeroptericola cinctiostellae
Pathway
hyf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DTO96_100014 (rhlE_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyf03019
]
DTO96_100014 (rhlE_1)
Enzymes [BR:
hyf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DTO96_100014 (rhlE_1)
Messenger RNA biogenesis [BR:
hyf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DTO96_100014 (rhlE_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
Cas3-like_C_2
SNF2-rel_dom
CpsB_CapC
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AXF84317
UniProt:
A0A345D7H9
LinkDB
All DBs
Position
13380..14867
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AA seq
495 aa
AA seq
DB search
MTQNAVHSAAPHFSDFNLDARILRAIEESGYTTPTPIQSQAIPVVLSGQDVMGSAQTGTG
KTASFVLPILQNILPLASTSTSPARHPVRALVLCPTRELAVQVADNAQKYAKHTPIRSAV
VFGGMDIKSQTPALRAGVELLIATPGRLLDHLESGNVSLGQVNYLVLDEADRMLDMGFLP
DLQRILNVLPKQRQTLLFSATFSPEIRKLAESYQKNPITIETAQRNATSQNITQTVYSVS
DKMQKRSALVQLIREQHVEQAMIFVNTKIEARELTRFLQRAKINAQSIHGDQSQTERLAT
LEGFKKNEVLILVATDVAARGLDISLMPCVINFDLPYNAEDYVHRIGRTGRAGSQGRALS
IATPHDDRLLAAICKLTKQAFTAIPLEPTPSREERPRSAERTARPPRAEGEAPRVRNNER
SAPHRRSAVEEQELSHLRRKVNLSSDPFFTQPYQPSPSTMSDAEKSKHSTWARPNKQGQN
APVAALFKLGKPSKR
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaaaacgcagtacattcggcagccccccatttttctgacttcaacttagacgca
cgaattttacgcgccatcgaagaatcgggttacaccacgccgacgccgattcagtcacag
gcaatccctgtggtattgagtggccaagacgtcatgggctcggcacaaacggggacgggc
aaaaccgcgagcttcgtgttgcccatcttgcaaaacatcctccccctcgcctcaaccagc
acctcacctgcgcgccaccccgtgcgcgctttggtgctgtgcccgacccgcgagttggcg
gtacaagtcgctgacaacgcacagaaatacgccaaacacacaccgatccgcagtgcagtg
gtgttcggcggcatggacatcaaaagccaaacacccgccttgcgtgcgggtgtcgaactg
ctgattgccacgccaggtcgactcctcgaccacctggagtcaggcaatgtgtcactcggt
caagtgaactacctcgtccttgacgaagccgaccgcatgttggacatgggctttttgcct
gacttgcaacgcattttgaatgtattgcccaaacaacgccaaacgttgctgttctccgca
accttttcacccgaaattcgcaaactggcggagtcataccaaaaaaatccgatcaccatc
gaaaccgctcaacgcaacgccacttcacaaaacatcacacaaacagtttacagcgtctcc
gataaaatgcaaaagcgcagtgcattggtgcaactgattcgcgaacaacacgttgaacaa
gccatgatctttgttaacacgaaaatcgaagcgcgggaactcacacgttttctccaacgc
gcaaaaatcaacgctcaaagcattcatggcgaccaaagtcaaacagaacgcttggccacg
ctagagggcttcaaaaaaaatgaagtgcttattttagtcgccacggatgtggctgcacgc
ggtttggacatatcactcatgccatgcgtgattaacttcgacttgccctacaatgctgaa
gattacgtgcaccgcattggtcgcacaggtcgtgcgggctctcaaggtcgcgcattatcg
attgcaaccccacatgatgaccgtttgctcgcagccatttgtaaactcaccaagcaagca
ttcaccgccatccccctcgaacccaccccaagcagagaagaacgcccacgcagcgcagaa
cgcacagcccgtccgccacgtgcagagggtgaagcaccacgtgtgcgcaacaatgaacgc
agtgctccccaccgccgcagcgccgttgaagaacaagaattgagccatttgcgtcgcaaa
gtgaacctatcaagcgatccattttttacacagccttatcaaccgtccccctcaacaatg
tctgatgctgaaaaaagcaaacactcgacatgggctcgtcctaacaagcaagggcaaaat
gcccctgtcgcagcacttttcaaattgggcaagcccagtaaacgttaa
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