Ephemeroptericola cinctiostellae: DTO96_100348
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Entry
DTO96_100348 CDS
T05560
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hyf
Ephemeroptericola cinctiostellae
Pathway
hyf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DTO96_100348 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyf03019
]
DTO96_100348 (rne)
03009 Ribosome biogenesis [BR:
hyf03009
]
DTO96_100348 (rne)
Enzymes [BR:
hyf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DTO96_100348 (rne)
Messenger RNA biogenesis [BR:
hyf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DTO96_100348 (rne)
Ribosome biogenesis [BR:
hyf03009
]
Prokaryotic type
rRNA processing factors
DTO96_100348 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
dnstrm_HI1420
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AXF84638
UniProt:
A0A345D8F0
LinkDB
All DBs
Position
complement(337898..341029)
Genome browser
AA seq
1043 aa
AA seq
DB search
MKRMLFNATNAEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVERSYFKAGVDARNVSIKDALSEGQEIIVQVEKEERGNKGAALTTFVS
LAGRYLVLMPNNPRGGGVSRRIEGEDRNELREAMSQLEIPQGMSIIARTAGIGRSAEELK
WDLDHSLRLWNAIAGAAEPSLDEKGKRENPAPFLIYLESSLVIRAIRDYYQPDIGEILID
TPEIFEQTQSFMGAVMPHNVHRVKLYTDDIPLYSRFQIEHQIETAYARTVPLPSGGAIVI
DHTEALVSVDVNSARATRGSDIEDTAYRTNLEAAEEVARQLRLRDLGGLIVIDFIDMESS
KNQKDVESRLKEALHYDRARVQMGKISRFGLMELSRQRLRPSLSEGSHTTCPRCNGTGVI
RDIESSALHVLRIIQEEAMKEHTAALNVQIPVDVATFLLNEKRAEIHILESRTKTNIILI
PNKYLETPHYKLDRMRHDDERLELVQASYAQVDKPAEEVEYNLKETLTPAPRQEAAVKGI
LPTSPAPTPVERAPVATAQAVIITEPKKVGFWARLKAFFFGAPAPVLEEVVEAPAPKPLA
RASNNRNAHNNRSRTEDRAQRGDRRRQRNDRTDKTEPKAEQKTERPVKADGATDTAEQKP
RQERRPRPERTERKDNDAQRTEPQAPEARVNESKDGEVREPREPRERRPRNNRNERKDTA
EVKASSEGGAVTVAAPASTVFAVEVEKTVKPAENVMTDEAAAAAGEAVEGQAVATGERRE
RRSRGGRDRRERRERRESREQNGQASPEMNATANTISQLMRDDAPVLDHTPITIEIPAHV
PVAGATFVVDAAPVVAPASIAPAVAVEPAPVVAVEAVVAEVAEVVVATESLVGHVEPMVE
TPVVETPVVERSPVEVTFVSEPAQVVAEAQAVPAAPAVPVVVPVEAVVHEVQAIEPIPVV
ETAVVVASTDAPAVADVPVEVIDAPLEAALSQVGLEMVQTSSDAVVPYVMTAPVRNHPPR
ERKPRSTVADEPLQLVETDQTVV
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttatttaatgccacgaacgcagaagaattgcgtgtggcgatcgttgat
gggcaaaagctcattgacctcgacatcgaaacggctgggcgcgaacagcgcaaaggcaat
atttataaaggtgtcatcacccgcattgagccatcgcttgaagcgtgctttgtgaattat
ggtgaagaacgtcatggcttcttgccattcaaagaggttgagcgcagctatttcaaagcg
ggcgtggatgcccgcaatgtcagcatcaaagatgccttgagcgaaggtcaagaaatcatt
gttcaagttgaaaaagaagagcgcggcaataaaggtgcggccttgacgacttttgtgtcg
ttggcggggcgttaccttgtgttgatgccgaacaacccacgtggcggcggtgtgtcacga
cgcatcgaaggcgaagaccgcaatgagttgcgtgaagccatgagccaattggaaatcccg
caaggcatgagcatcattgcccgcactgcgggcattggccgttcggctgaagagttgaaa
tgggacttggatcactcgttgcgcctgtggaacgcgattgcgggcgcggccgagccgtcg
ttggatgaaaaaggcaagcgtgaaaaccctgcaccattcctgatttacctcgagtcatcg
ttggtcattcgtgcgattcgcgattattaccagcctgacattggcgaaattttaatcgac
acgcccgaaatttttgagcaaacccagtcgtttatgggtgctgtcatgccacacaatgtg
caccgtgtgaaattgtacacggacgacattccgttgtattcacgtttccaaatcgaacac
caaattgaaacggcatatgcccgcaccgtgcctttgccatcaggtggcgcgattgtgatt
gaccacaccgaagcccttgtttcggtcgacgtcaacagtgcgcgtgcaacccgtggttcg
gacatcgaagacaccgcgtatcgcaccaaccttgaagcggctgaagaagtcgcgcgccaa
ttgcgcttgcgtgatttgggcggcttgattgtgattgatttcatcgacatggagtcatca
aaaaatcaaaaagacgttgagtctcgcctcaaagaagcattgcattacgaccgtgcacgc
gttcaaatgggcaaaatttcacgctttggtttgatggagttgtcgcgtcaacgcttgcgc
ccgtctttgtcagaaggttcacacaccacttgcccacgttgcaatggcacgggcgtcatt
cgtgacatcgagtcgtcggctttacatgtcttgcgcatcatccaagaagaagcgatgaag
gagcacaccgcagcactcaatgtgcaaattccagtggatgtggcaactttcttgttgaac
gaaaaacgcgcggaaattcacatcctcgaatcgcgcacaaaaaccaacatcattttgatc
ccaaataaatatttggaaacgccgcactataagttggatcgcatgcgtcatgatgatgag
cgccttgagctcgtgcaagcaagctatgcacaagtggacaagcctgcggaagaagtagag
tacaacttgaaagaaacgctgacacccgcacctcgtcaagaggccgcagtgaaaggcatt
ttacccacctctcctgcacccacacctgttgaacgcgcacctgtggctacggctcaggcg
gtgatcattacggaaccgaaaaaagttggtttctgggcgcgtttgaaagcattcttcttt
ggcgcacctgcacctgtgttggaggaagtcgttgaggcacccgcacccaagcctctggcg
cgtgcaagcaacaaccgcaatgcacacaacaaccgcagccgcactgaagaccgtgcacaa
cgcggagaccgccgtcgtcagcgcaatgaccgcacagacaaaacggagccaaaagcggaa
caaaaaacagaacgcccagtgaaagcagacggcgcaacggacacggcagagcaaaagcca
cgtcaagagcgtcgccctcgcccagagcggactgagcgcaaagacaacgacgcccagcgc
acggagccacaagcgcctgaagcccgcgtcaatgaaagcaaagatggcgaagtgcgcgaa
ccacgtgagccacgtgaacgtcgtccacgcaacaaccgcaatgagcgtaaagacacggcg
gaagtcaaagcatcctctgaggggggggctgttactgttgctgcgcccgccagcacagtg
tttgccgttgaagttgaaaaaacagtcaaacctgcagaaaacgtcatgactgatgaagcc
gccgctgctgcgggtgaggccgttgagggtcaagcggtggcaacgggcgaacgccgtgaa
cgtcgcagccgtggggggcgtgatcgccgcgagcgtcgtgagcgtcgtgaaagccgagaa
caaaatggtcaagcttcacccgaaatgaatgccacggccaacacgatttctcagctcatg
cgtgacgatgcacccgtccttgatcacacgccgatcaccattgagattcctgcacatgta
cctgtagcaggagcgacatttgtggttgatgccgcacctgttgtggcgcctgcatcaatt
gcacctgccgtcgccgttgagccagcacctgttgtcgctgttgaagcagttgttgctgaa
gttgctgaggttgttgttgcgactgaatcgcttgtgggtcatgttgagccaatggttgaa
acgcctgtggttgagaccccagttgttgaacggtctcctgttgaagtgacttttgtttca
gaacctgcacaagtggttgcagaggcacaagcagtgcctgccgcacctgctgtacccgtc
gtcgtacctgttgaggcggttgtgcatgaagtgcaagcaattgaaccgattcctgttgtt
gaaacagcggttgttgtggcgtcaacggatgcacctgccgtggccgatgttcccgttgag
gtcattgatgcaccgttggaggcggctttgagtcaagtgggtttggagatggtgcaaacc
agcagtgatgctgtggtgccatacgtgatgactgcgcctgtgcgcaatcacccaccgcgt
gagcgcaaaccgcgctcaacggtggcggatgaaccgttgcagttggttgaaaccgatcaa
acggttgtgtaa
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