Ephemeroptericola cinctiostellae: DTO96_101805
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Entry
DTO96_101805 CDS
T05560
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hyf
Ephemeroptericola cinctiostellae
Brite
KEGG Orthology (KO) [BR:
hyf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyf03019
]
DTO96_101805
Enzymes [BR:
hyf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DTO96_101805
Messenger RNA biogenesis [BR:
hyf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DTO96_101805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_22
HA2_N
AAA_19
nSTAND3
AAA_23
AAA_30
T2SSE
NACHT
ABC_tran
SRP54
FtsK_SpoIIIE
PhoH
Motif
Other DBs
NCBI-ProteinID:
AXF86064
UniProt:
A0A345DCH6
LinkDB
All DBs
Position
complement(1998273..2002235)
Genome browser
AA seq
1320 aa
AA seq
DB search
MNPVQHKNSNHHRKPNAPHAPKAVVPAVTPAQAEAFKQHIVFPDNLPVSAEREAISALIE
HNQVVIICGETGSGKTTQLPKMCLALGRGIGAGGRGLIGHTQPRRLAATSTAKRIAEELG
TSLGEVVGYKIRFQDRLHEGASVKLMTDGILLAETQRDPLLKQYDTIIIDEAHERSLNID
FLLGYLKEILPKRTDLKIIITSATIDAERFATHFANEKGNAPIMNVSGRTYPVEVRYRPI
QRNENDKERDLYDGIVDAVDELAREGSGDVLVFLPGEREIREAAESLRKHHPPHVEILPL
FARLTAQEQERIFKPSNARRIVLATNVAETSLTVPGIRYVIDSGLARVKRYSYRQKVEQL
QVESIAKSAANQRSGRCGRVAAGICIRLYEEADFIARPDFTDPEIMRSSLASVILRMKAL
GLKQIEEFPFVQAPLNRAIVDGYHLLQELGALTDDYQLTKTGRELAKLPIDPRVARMILA
ARDEGALREVLIIASALSVQDVRDRPAELRAQADSAHAKFNDASSEFLTYLKIWNWFDDA
IKHKKSNKLLQENCRSNFLSQLRLREWRDVHTQLSTMVKEQGWRMNETEPTFEQLHCALL
AGLLGNVGFKSELSNDANKPAAGQNAKVGQRGQYYQGARGIQFYLWPGSSLKKKTGQWVM
AAELIETTRLFARILAKIEPKWLERVGAHLLKKTYSEPRWRKKSGQVQADERATLYGLVI
YNQRPVSYARINPQETRDVFIRDGLAQHEFEGRFPFLTHNKQLIAHIENLEHKSRRQDVL
VDDELIVAFYDSVIPPEIMDVRALQKWHDDVVKTDPKILYLSKDELMRHEASGVTTDVFP
KTMEVGGLTCSLTYHFEPNSPRDGVTLTVPITVLNQVSAVQCEWLVIGMIKDKVQALLKS
LPQKIRRHCVPLPDYVQDFVAWAVEEQRMGEQALLDALIIHVRLRTGQQLKTTDFKLETL
STHASMNFKLVDEYGRQLEMTRDLSLLRTHFGGQARESFQDVVQAQSDSSNTATPSKKLN
TSQTAHKTIAGEAGRKIMTWDFGVLPELMELQKNNAKIFGYPALQDCETHCEMSVWDEEH
LAQAVHLQGLLRLARLHFKESLKHLDKNIPDAANMGMLYAGLTSDTLEALKTDIVSLALQ
RACGLDDVSQWPRDTLAFENMLAQAKNRLGLIVQEIAKLVLLILTEWQAAQKKLVSVKTQ
LNAYNDMTAQIERLTPKRFVLNTAYAQLVHYPRYFKAIALRVDKLKNDSARDAQLMRDML
PLVQNWQRAVNERGGQMDDGLVPFRWLLEELRVGLFAQELRTPMPVSIKRLHKVWDSLQR
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgaacccagtacaacacaaaaacagtaaccatcaccgcaaaccaaatgcgccacatgcc
cctaaggctgttgtgcctgctgttacgcccgcacaagcggaagcatttaaacagcacatt
gtttttccagataatttacccgtcagcgctgagcgtgaggccatcagtgcattgattgag
cacaatcaagtggtgattatttgcggtgaaacggggtcgggtaaaaccacgcaattaccg
aaaatgtgcctcgctttggggcgcggcatcggtgcgggcggtcgagggttgattggtcat
acgcagccccgccgtttggcggcgaccagcacggccaaacgaattgcagaagagttgggt
acatcgttgggcgaggtggtcgggtataaaatccgttttcaggatcgcttgcatgagggt
gcatcggtcaagttaatgaccgatggcattttgcttgccgaaacccagcgcgatccattg
cttaagcaatacgacaccatcatcatcgatgaagcgcacgagcgcagcttgaacattgat
tttttgctcggctatttgaaagaaattttacccaaacgcacagatttaaaaatcatcatc
acttcggcgacgattgatgcagagcgatttgccacgcattttgccaatgaaaaaggcaat
gcgccgatcatgaatgtgagcggtcgaacgtatcctgtcgaggtgcgttaccgccccatt
cagcgcaacgaaaatgacaaagagcgtgacctgtacgatggcatcgtcgatgcggtggat
gagctggcacgcgaaggttcgggtgatgtgttggtgtttttgcctggtgagcgcgaaatt
cgtgaggcggccgaaagtttgcgcaagcaccatccgccgcatgttgagattttgcccttg
tttgcgcgattgactgcgcaagagcaggagcgtattttcaaaccatcgaatgcgcggcgc
attgtgttggcgaccaatgtggcggagacatcgttgaccgttccgggcattcgttatgtg
attgacagtggtttggcgcgggtgaaacgctattcataccgtcaaaaagtagagcaattg
caagtggagtcaattgcgaagtcagctgccaaccaacgttcggggcgttgcggtcgggtg
gcggcgggcatttgcattcgtttgtatgaagaagccgattttattgctcgacctgatttt
accgaccctgaaatcatgcgttcgtcgttggcgagtgtgattttgcgcatgaaagcgctc
ggtttgaagcaaatcgaagagtttccatttgtgcaagcaccgctcaatcgtgcgattgtc
gatggttatcatttgctgcaagagttgggcgcattgaccgatgattaccaactgaccaaa
acaggccgtgagttggcgaaattgccgattgatccccgcgtggcgcgaatgattttggcg
gcacgcgacgaaggcgcattgcgcgaagtgttgatcattgcgagtgcgttgtctgtgcaa
gatgtgcgcgatcgaccagcggagttgcgggcgcaggcggattctgcgcatgcaaaattt
aacgatgcatcatcggaatttttgacgtatttgaaaatttggaactggtttgacgacgcc
atcaagcacaaaaaatccaataagttacttcaagaaaattgtcgttcaaatttcctatcg
cagttgcgcttgcgcgaatggcgcgatgtgcacacgcagctttcaacgatggtgaaagag
cagggttggcgcatgaatgaaaccgagccgacctttgaacaattgcattgcgccttgctt
gcgggcttgctgggcaatgtcggtttcaaatctgaactgagcaatgacgcgaataaaccc
gccgcagggcagaatgccaaagtgggtcagcgtgggcaatattatcaaggtgcacgcggg
attcagttctatttgtggccgggttcgagcctgaagaaaaaaacaggccaatgggtgatg
gcagcggaattgattgaaaccacacgtttgtttgcacgaatattggcaaaaattgagccg
aaatggctggagcgcgtgggcgctcatttgctcaaaaaaacctacagcgaaccgcgttgg
cgtaaaaaatctggacaagtgcaggcggatgaacgcgccacattgtacggcttggtgatt
tataaccagcgtcccgtgagctatgcacgcatcaatccgcaggagacgcgcgatgtgttc
atccgtgatgggttggcacagcatgaatttgaaggccgtttcccattcctcacacacaac
aagcaattgatcgcccacatcgaaaaccttgagcacaaatcacgccgccaagatgtgttg
gtggacgatgagttgattgtcgcattttatgacagcgtgattccgcctgagatcatggat
gtgcgtgctttgcaaaaatggcacgacgatgtggtgaaaaccgatccgaagattttatat
ttgtccaaagacgaactcatgcgtcacgaggcgtctggggtgaccaccgatgtgtttcca
aaaacgatggaagtcggcggtttgacgtgcagtttaacctatcattttgaacccaacagc
ccgcgcgacggcgtgaccttgaccgtaccgattaccgtgctcaatcaagtgtcagcggtg
caatgtgaatggttggtgattggcatgattaaagacaaagtgcaggctttactcaaatca
ttgccacagaaaattcgtcgccattgcgtgccattgcctgattatgtacaggattttgtg
gcttgggcagtggaagaacaacgcatgggcgagcaagctttgctggatgcattgatcatc
catgttcgtttgcgcacgggacaacagctgaaaaccaccgattttaaattggaaacctta
tccactcacgcatcgatgaattttaaactggtcgatgaatacggtcgtcaacttgaaatg
acgcgcgacctgagtttattgcgcacgcattttggtggtcaagcgcgtgaatcatttcaa
gatgtggtgcaggcgcaaagcgacagcagcaacaccgcaacaccgtccaaaaagctcaac
accagccaaaccgctcataaaaccatcgcgggcgaagcggggcgaaagatcatgacgtgg
gattttggggtgttgcccgagttgatggaattgcaaaaaaataatgcgaaaatttttggt
tatcctgcgttacaagactgtgaaacgcactgtgaaatgtcggtgtgggatgaggaacac
cttgcgcaagccgtgcatttgcaaggcttactgcgtttggcgcgtctgcattttaaagaa
agtttaaagcatttggataaaaacattcccgatgccgcgaatatgggcatgctctacgcg
gggttgaccagcgacacgttggaagcattgaaaaccgacattgtttcgttggcactgcaa
cgggcatgcggcttggatgacgtgagccagtggccacgtgacacgctggcttttgaaaac
atgctggcacaagcaaaaaaccgtttgggtctgattgtgcaagaaatagcgaagttggtg
ctgttgattttgaccgaatggcaagccgcacaaaaaaaactggtctcagtgaaaacacaa
ctgaacgcatacaatgacatgacggctcagatcgaacggctcacgcccaaacgctttgtc
ctgaacaccgcgtatgcgcagctggtgcattatccgcgttacttcaaagccattgctttg
cgcgtcgataaactgaaaaatgacagcgcacgcgatgcacaattgatgcgcgacatgttg
ccgttggtgcaaaactggcagcgcgcggtgaatgagcggggcggtcaaatggacgacggt
ttggtgccttttcgttggttgctcgaagagctgcgcgttggtttatttgcacaggaattg
cgcacgccgatgcccgtgtccatcaaacgactgcacaaagtatgggacagtttgcagcga
taa
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