Hymenobacter sedentarius: AUC43_00970
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Entry
AUC43_00970 CDS
T04242
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
hyg
Hymenobacter sedentarius
Pathway
hyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AUC43_00970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyg03019
]
AUC43_00970
Messenger RNA biogenesis [BR:
hyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AUC43_00970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
RNase_Y_N
KH_1
HDOD
KH_KhpA-B
DUF4954
NttC
KH-I_KHDC4-BBP
KH_2
Motif
Other DBs
NCBI-ProteinID:
ALW83797
UniProt:
A0A0U4AJY9
LinkDB
All DBs
Position
219203..220876
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AA seq
557 aa
AA seq
DB search
MYCLLTAVVALVAGFVIGKQLAGKARLDHEGQATARAQEILRDAEEKGNRLRDEKIKQAD
ERLEQSKNKFKNLRNEFDVESRRLKQSLEQELTERRQGVVEQEQSIKLLTETTQRQLEQL
QRKEVELEKAREKNQNDTQQLRDKLESQAEKRRLDHEAAMAELEEKQKEAEEQLHSVQRQ
LETIANLTAAEAREQLVESLKNEAQIQASSYVKDTVAQAKLTATKDAKKIVLETIQRTAS
EHAIENCVSIFNIESDDVKGKIIGREGRNIRALEAATGVEIIVDDTPEAIIISGFDPVRR
EIARLSLHLLVKDGRIHPARVEEIVAKTRKNIEEEIVEIGEKTIIDLGIHGLHPELIKMV
GRMRFRSSYGQNLLQHSREVANLCATMAAEMGLDVKKAKRAGLLHDIGKVSTEEPELPHA
ILGMEMAKKWKEHPDVVNAIGAHHDEIEMTAMISPLVQACDAISGSRPGARREMMESYIK
RLKQLEETANGFKGVNQCFAIQAGRELRVMVDAENVTDERAAELSFEISQKIEKEMQYPG
QIKITVIREMRAVAYAK
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgtactgtttgctgaccgcggtggtcgcccttgtggcgggcttcgtgattggcaagcag
ctggccggcaaagcccggctggaccacgaaggccaggccacggcccgggcccaagaaatc
ctccgcgacgccgaggagaaaggcaaccgcctccgcgacgaaaagataaagcaggccgac
gagcgcctggagcagtccaagaacaagttcaagaacctccgcaacgagtttgatgtcgaa
agccgccgcctaaagcagagcctggagcaagagctcaccgagcgccgccaaggcgtagtc
gagcaagagcagagcatcaagctgctcaccgaaaccacccagcgccagctcgagcagctg
cagcgcaaggaagtggagctggaaaaagcccgcgagaaaaaccagaacgacacccagcaa
ctgcgcgacaagctggaaagccaggccgaaaagcgccgcctcgaccacgaagccgctatg
gctgagctggaagaaaagcagaaagaggccgaagagcagctccattcggtacagcgccag
ctcgagaccattgccaacctcacggccgccgaggcccgcgagcagctggtagaatcccta
aaaaacgaagcccagattcaggccagttcctacgtgaaggacaccgtggcccaggccaag
ctgaccgccaccaaagacgccaagaagattgtgctggaaactattcagcgcaccgcttcg
gagcacgccattgagaactgtgtgtcgattttcaacattgaaagcgacgacgttaagggt
aaaatcatcggccgtgagggccgcaacatccgggcgctggaagccgcgacgggcgttgaa
atcatcgtggacgacacgccagaggccatcatcatctcgggcttcgacccggtgcgccgc
gaaattgcccgtctctccctgcacttgctggtgaaggacggccggattcaccccgcccgc
gtggaggaaatcgtggctaagacccgcaagaacatcgaagaggaaatcgtcgaaattggc
gagaagaccatcattgaccttggcattcacggcctgcaccccgagctgattaagatggtg
ggccgcatgcgcttccgctcatcgtacggccaaaacctgctgcagcactcgcgcgaagta
gccaacctctgcgccaccatggccgccgagatgggcctcgacgtgaagaaagccaagcgg
gccggcctgctccacgacatcggcaaggtgagcaccgaggaacccgagctgccccacgcc
atcttgggcatggagatggccaagaagtggaaagagcaccccgacgtggtgaacgccatc
ggcgcccaccacgacgaaattgaaatgactgccatgatttcgccgctcgtgcaggcctgc
gacgccatctcgggctcgcgccccggtgcccgccgcgagatgatggaaagctacatcaag
cgcctcaagcaactcgaagaaaccgccaacggcttcaagggcgtgaaccaatgcttcgcc
atccaggccggccgcgagctgcgcgtgatggtcgacgccgagaacgtgaccgacgagcgc
gccgccgagctgagcttcgaaatttcgcagaagattgagaaggaaatgcagtacccgggc
cagattaaaatcaccgtgattcgggagatgcgcgccgtggcgtacgccaagtaa
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