Hymenobacter sedentarius: AUC43_02540
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Entry
AUC43_02540 CDS
T04242
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hyg
Hymenobacter sedentarius
Pathway
hyg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AUC43_02540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyg03400
]
AUC43_02540
Enzymes [BR:
hyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AUC43_02540
DNA repair and recombination proteins [BR:
hyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AUC43_02540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Zeta_toxin
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALW84073
UniProt:
A0A0U4C759
LinkDB
All DBs
Position
599913..603326
Genome browser
AA seq
1137 aa
AA seq
DB search
MQVADFLRLYRLSPELQTLASRLRAAAKPDPSSVRLHLRGLVGSQDAVVAAAVAHAQHPH
VFVLHDKDEAAYFLSDLQHLLPEGPEALLFPSSYKRPYQFDETENANVLMRAEALNRLNT
TRAATTGNSVFIVTYPEALTEKVINRQSLVKNTFNAKVGDKLDVNFLGELLGEYDFEKTD
FVYEAGQYAVRGGIVDVFSYANELPFRLELFGDEIESIRTFNPETQLSVEPRPSISIIPN
VQTKMLTETREAFFEFLPRTACIWMKDVRQTLDVVTELYEKAEANFQQMLSEAGGMQIVS
KPSDLFESGKNFKKLLDEFAVVEFGKRFHFKNAETFQFSAKPQPSFNKEFERMVKNLKEN
QLRGFTTIITADTVRQADRLRTIFDELDNNVQFQHLLLALREGFIDEQLELAVYTDHQLF
ERYYRAQETRKFSKKKALTLRELKTLQPGDYVTHQDYGIARFAGLTQVEINGQIQEAIRL
VYRDDDLLTVSIHSLHKIAKYSGAEGAPPTMSKLGSPEWENKKKSVKKKVKDIAADLIRL
YAKRKTAPGFAFSPDGFMQAELESSFIYEDTPDQAKATEDVKQDMQQPHPMDRLVCGDVG
FGKTEIAIRAAFKAVADGKQAAVLVPTTILAMQHYKTFRDRLATLPVTVEYINRFKSTKQ
IKETLQRVAEGKTDILIGTHRLTNKDIKFKDLGLLIIDEEQKFGVKTKDKLKELKVNVDT
LTLSATPIPRTLHFSLMGARDLSVIATPPPNRQPVQTELHVFDEILIRDAVSRELKRGGQ
VFFVHNRVKDIEEMANTILRLVPDAKITYAHGQMDGEMLEKRMMKFVEGEYDVLVSTNII
ESGLDIPNANTIIINRAHLAGLSDLHQMRGRVGRSNRKAYCYLLTPPVANLPADARKRLS
TLEEFSDLGAGFNVAMRDLDIRGAGNLLGGEQSGFINDLGYETYHQILDEAVQELKETEF
RDLFLGDSNQRLQQAAGAGRIQECNVETDQQVLIPEKYVSNVSERLQLYAKLDRAQKPEE
LQKLLTSMTDRFGPLPPEVEQLADIVRLRWQACKVGFTKITLKRDTLKGFLPADDDHKAY
FQGEQFGTILNYVQTHSRTANLKEKKEQLIVTFEEVRSIQQAKRVLSELGSEEAVAV
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagtagctgattttcttcgcctctaccgcctttcgcccgagttgcaaaccctggct
tcacgcctgcgcgcggccgctaagcctgaccccagcagcgtgcgcctgcacctgcgcggc
ctcgtgggcagccaggatgcggtggtggccgctgcggtggcccacgcccagcacccgcac
gtgttcgtgctgcacgacaaggacgaggcggcgtatttcctatcggatttgcagcacttg
ctgccggaggggcccgaggcgctgctgtttcccagctcctacaagcgcccgtaccagttc
gacgagaccgaaaacgccaacgtgctgatgcgcgccgaagccctaaaccggctcaacacg
acccgcgcggccaccaccggcaacagcgtattcatcgtgacttaccccgaagcgctgacg
gagaaagtaatcaaccggcagagcttggtaaaaaacaccttcaacgccaaggtgggcgac
aagctggacgtgaatttcctgggcgagttgctgggcgagtacgacttcgagaagacggat
tttgtgtacgaagcgggccagtacgccgtgcgcggcggcatcgtggacgtgttcagctac
gccaatgagctgccgttccgacttgagctatttggcgatgaaatcgagagcatccgcacg
ttcaatcccgagacgcagctctcggtggagccgcggccgagcatcagcatcatccccaac
gtgcagaccaagatgctgacggaaactcgagaggcgttcttcgaatttctgccccgcacg
gcctgcatttggatgaaagacgtgcgccagacgctagatgtggtgacagaactgtacgag
aaagccgaggctaacttccagcagatgctgagcgaggcgggcggcatgcaaatcgtgagc
aagcccagcgatttgttcgagtcgggcaagaatttcaagaagctgctcgacgaattcgcg
gtagtggaattcggcaagcgctttcatttcaagaatgccgaaacgtttcagttcagcgcc
aagccgcagcccagtttcaacaaggaatttgagcggatggtgaagaacctgaaggagaac
cagcttcgcggcttcaccaccatcatcacggccgacaccgtgcggcaggctgaccggctg
cgcaccatcttcgatgagctggacaacaacgtgcaattccagcacctgctgctggccttg
cgcgaaggctttattgatgagcagcttgagctggccgtgtataccgaccaccagctgttt
gagcgctactaccgggcgcaggaaacccgcaaattctcgaagaagaaggcgctgacgctg
cgggagctgaaaacgctgcagcccggcgactacgtgacccaccaggactacggcatcgcg
cgcttcgcgggcctcacgcaggtggaaatcaacgggcagattcaggaggccatccggctg
gtgtaccgtgatgatgacctgctgacggtcagcattcactcgctacacaagattgccaag
tacagcggggccgagggcgcgccgcccaccatgagcaaattgggctcgccggagtgggag
aacaagaagaagtcggttaagaagaaggtcaaggacattgcggccgacctcatccggctg
tacgccaagcgcaagaccgcaccgggcttcgctttctcgcccgatggatttatgcaggcg
gagctggaatcgagcttcatttacgaggatacgcccgaccaggccaaggccaccgaggac
gtgaagcaggacatgcagcagccccaccccatggaccggctggtgtgcggcgacgtgggc
tttggcaagacggaaattgccatccgggcggctttcaaggccgtggccgatggcaagcag
gcggccgtgctcgtgcccaccaccatcctggccatgcagcactacaagaccttccgcgac
cggctggccacgctgcccgtgacggtggaatacatcaaccgctttaagtcgaccaagcag
attaaggaaaccctgcagcgcgtggccgagggcaaaaccgacattctcatcggcacgcac
cggctcacgaacaaggacatcaagtttaaggacctgggcttgctcattatcgacgaagag
cagaagtttggggtaaaaaccaaggacaagctcaaggagctgaaggtgaacgtggacacg
ctcacgctttcggccacgcccattccgcgcacgctgcatttctcgctgatgggcgcccgc
gatttgagcgtgattgccacaccgccgcccaaccgccaaccggtgcaaacggagctgcac
gtgttcgacgaaatcctgattcgcgacgcggtgtcgcgggagttgaagcgtggggggcag
gtgttttttgtgcacaaccgcgtgaaggacatcgaagaaatggccaacaccattttgcgc
ctcgtgccggatgcgaaaatcacctacgcccacgggcagatggacggcgagatgctcgag
aagcgcatgatgaagttcgtggagggcgagtacgacgtgctggtgagcaccaacatcatc
gaaagcgggctcgacattcccaacgccaacacaatcatcatcaaccgcgcccacctggcc
ggcctctccgacctgcaccagatgcgcggccgcgtgggccgctccaaccgcaaggcctac
tgctacctgctcacgccgccggtggccaacctgccggccgacgcccgcaagcgcttgagc
acgctggaggagttttcggacctgggcgcaggcttcaacgtggccatgcgcgacctcgac
attcgcggggcgggcaacctgctgggcggcgagcagtcgggcttcatcaacgacttgggc
tacgagacctaccaccaaatcctggacgaggcggtgcaggagctcaaggaaaccgagttc
cgcgacctgttcctgggcgactccaaccagcggctacagcaggccgccggtgcgggccgc
attcaggaatgcaacgtggagaccgaccagcaggtgctcatcccggaaaagtacgtgagc
aacgtgtcggagcgcttgcagctctacgccaagctagaccgcgcgcagaagccggaggag
ctgcaaaagctgctcaccagcatgacggaccggtttggcccgctgccgcccgaagtggag
caactggccgacatcgtgcggctgcgctggcaggcgtgcaaggtgggctttaccaaaatc
acgctcaagcgcgacaccctgaaaggctttctgcccgccgatgacgaccacaaagcctac
ttccagggcgagcagttcggcaccatcctgaactacgtgcagacccactcgcgcacggcc
aacctcaaggagaaaaaggaacagctgattgtgacgtttgaggaagtgcgctccattcag
caggccaagcgtgtgctgagtgaattgggtagcgaggaggcggtggcggtataa
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integrated database retrieval system
