Hymenobacter sedentarius: AUC43_07930
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Entry
AUC43_07930 CDS
T04242
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hyg
Hymenobacter sedentarius
Pathway
hyg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hyg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AUC43_07930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyg03021
]
AUC43_07930
03400 DNA repair and recombination proteins [BR:
hyg03400
]
AUC43_07930
Enzymes [BR:
hyg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AUC43_07930
Transcription machinery [BR:
hyg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AUC43_07930
DNA repair and recombination proteins [BR:
hyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AUC43_07930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ALW85024
UniProt:
A0A0U4AN92
LinkDB
All DBs
Position
1916082..1920437
Genome browser
AA seq
1451 aa
AA seq
DB search
MAFAKNKKLVQDFSKVTISLASPEAILERSTGEVVKPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKI
GYLLGLPTKKLDQIIYYERYVVVQPGALAEEGVQILDFLTEDEYLDIIDKLPRENQMLPN
EDPNKFIARMGADALHMLLERINLDELSYSLRDSAAHETSQQRKAEALKRLRVVEAFRDA
ATRVENRPEWMVIRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRAEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKNMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDA
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPRLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGPAAILEASMLMLASHNILNPANGAPIAVPSQDMVLGLYYVTKGKRSTDDETIQ
GEGRVFYSDEEVVIALNEGQLSKHAYIKVRTQIRDENDDLVTKVVETVAGRVLFNQLVPK
EVGFVDELLTKKKLQQIISTVFKRTGMARTAQFLDDIKTLGFQSAYKGGLSMGLGDIQIP
KEKDELVLQAQNDVKAVTQNYQMGLITDNERYNQVIDIWTRINNQITETLMGRLERENQG
FNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKSLQGSIGEIIENPILSNFKEGLDVIE
YFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNEPDCGTLRGIETFALKDNEDI
VEPLSERILGRVTVHDIVDPITDEVILASGSEIKEDTTRRIDATGIESVEIRSVLTCESK
RGICAKCYGRNLASGRMVQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAVEANIK
SKFAGVVEFEDVRTVATTTPEGVKGAVVMGRSGEIRIVEKGTGKVFTTNHVPYGSFMLVE
EGQEVEKGQELNNWDPYNAVILAEFDGTVQFDAITEGITYREESDEQTGHREKVIIESKA
KDQNPSIIVRPGKKGDAEGQKAYSIPVGSHLNVENNDKIKAGHILAKIPRSVGKTRDITG
GLPRVTELFEARNPSNPAVVSEIDGVVTYGTVKRGNREIYVESKDGVKKKYMVPLSKHIL
VQDNDFIRAGMPLSDGAITPSDILSIQGPGAVQEYLVNEIQEVYRLQGVKINDKHIEVVV
RQMMQKVVILDAGDTSFLENQVIDKIIFMAENDMIIDMKVVTEAGDSTNMKPGQIVNARK
LRDENSSLKRRDLALVQVRDAQPAVSRPTLQGITQASLGTASFISAASFQETTKVLSEAA
IRGKADQLLGLKENVIVGHLIPAGTGLREYTRQVVGSKEEMEAAQLAAKAAEEVVPAKRP
SRAGKREVSAE
NT seq
4356 nt
NT seq
+upstream
nt +downstream
nt
atggctttcgcaaaaaacaagaaactggtacaggacttctccaaagtcaccatttccctg
gcctcgcccgaagcaattctggagcggagcactggcgaagtagtgaagcctgaaaccatc
aattaccgcacctacaagcccgagatgggtggcttgttctgtgagcggattttcggtccg
gttaaggactgggaatgccattgcggcaaatacaagcgcattcgctacaagggcatcatc
tgcgaccgttgcggcgtggaggtgaccgagaagaaagtgcgtcgtgagcgcatgggccac
atcgaactcgttgtgccggttgctcacatctggtacttcaagtcgctgcctaacaaaatc
ggctacctgctgggcctgcccaccaagaagctcgaccagattatctattacgagcggtac
gtcgtggttcagcccggtgccttggctgaagagggcgtgcagattctcgacttcctcacc
gaagacgagtacctggacatcatcgacaaactcccccgggagaaccagatgctgcccaat
gaggaccccaacaagttcatcgcccgcatgggtgccgatgccctgcatatgctgctggag
cgcatcaacttggacgagttgagctactcactgcgtgactccgctgcccacgagacttcg
cagcagcgtaaggctgaggcgttgaagcgtctgcgcgtagtggaagccttccgtgacgcc
gctacccgcgtggaaaaccgccccgagtggatggtaatccgcatggtgccggtgattccg
ccggaattgcgtcccctcgttccgctcgacggtggccgtttcgccacttccgacttgaac
gacctgtaccgtcgcgttatcattcgtaacaaccgcctcaagcgcctgattgaaatcaaa
gcgcccgaggtgattctgcggaacgagaagcgcatgctgcaggaggctgttgactccttg
ttcgacaactcgcgtaaggtgaacgccgtgcgtgccgaaggcaaccgcgctctgaagtcg
ctgtccgatatgctgaaaggcaagcagggccgtttccgtcagaacctgcttggtaagcgt
gttgactactccggtcgttcggtaatcgttgtaggtcctgagctgaaactgcacgagtgc
ggtctgcccaagaacatggcggccgagctgttcaagccgttcatcatccgcaagctcatc
gagcgtggcattgtgaagacggtgaaatcggctaagaaaatcgtggaccgtaaggacgcc
gtggtttgggacatcctggagaacgtgctgaaaggccacccggtgttgctcaaccgtgct
cctacgctgcaccgcttgggtatccaggcgttccagccgcgcctcatcgagggcaaggct
atccagctgcaccccctcgtttgtacggccttcaacgctgactttgacggtgaccagatg
gctgtgcacgttcccctcggaccggccgctatcctggaagcctccatgctcatgctggcc
tcgcacaacatcctaaatcccgccaacggcgcgcccatcgcggtaccgtcgcaggacatg
gttctgggtctgtactacgttaccaaaggcaagcgcagcaccgacgacgagacgattcag
ggcgaaggccgtgtgttctactcggatgaagaggttgtgattgccctcaatgaaggccag
ctctcgaagcacgcctacattaaggtgcggacgcagattcgcgacgagaacgacgacttg
gttaccaaggtagttgagaccgtagccggccgcgtgctgttcaaccagctcgtgcctaag
gaagttggtttcgtagatgagctgctgaccaagaagaagctgcagcaaatcatctcgacg
gtgttcaagcgcacgggcatggctcgtacggctcaattcctcgatgatatcaagaccctc
ggtttccagtcggcctacaaaggcggcttgagcatgggtctgggtgacatccagattccg
aaagagaaagacgagctagtactgcaagcgcagaacgacgtgaaggccgtgacccagaac
taccagatgggtctgattaccgacaacgagcgttacaaccaggttatcgacatctggacg
cgtatcaacaaccaaatcacggaaacgctgatgggtcgtttggagcgcgaaaaccagggc
ttcaactccatctacatgatgatgcactcgggagcccgtggctcgcgcgagcagattcgt
cagctgggcggtatgcgtggtctgatggccaagccgcagaagtcgctgcagggttctatt
ggtgagattatcgaaaacccgattctgtctaacttcaaagaaggcctggacgtaatcgag
tacttcatctcgacccacggtgcccggaaaggtctggctgacacggctctgaagacggct
gacgccggctacctgacccgtcgtctggtagacgtttcgcaggacgtaatcgtgaacgag
ccggactgcggtaccctgcgtggcatcgaaaccttcgcgttgaaagacaacgaggacatc
gttgagccactgtcggagcgtatcctcggccgcgtaacggttcacgacatcgtggacccc
atcacggacgaagttatcttggcttccggttcggaaatcaaggaagacacaacccgtcgc
atcgatgctaccggcatcgagtcggtagagattcgctcggtactgacttgcgaaagcaag
cgcggtatctgcgccaagtgctacggccgtaacctggcttcgggccgcatggtgcagcgt
ggcgaggccgttggtgttatcgccgctcagtcgattggtgagcccggcacgcaactgacc
ctgcgtaccttccacgtaggtggtacggcttccaacattgcggtggaagccaacatcaag
tcgaagttcgctggtgtggttgagttcgaagacgtacgtaccgtggctaccaccacgccg
gaaggcgtgaagggtgctgtggtaatgggtcgctcgggcgagattcgcatcgtggagaaa
ggcactggcaaagtattcaccaccaaccacgttccctacggctctttcatgctggtagag
gaaggtcaggaagtggagaaaggccaggagctgaacaactgggacccgtacaacgccgtt
attttggccgagttcgacggtaccgttcagttcgacgccatcaccgaaggcattacgtat
cgtgaggaatcggacgaacagaccggtcaccgcgagaaggtaatcatcgaatcgaaggct
aaagaccagaacccgtccatcattgtgcgccccggcaaaaagggcgatgccgaaggccag
aaggcctacagcatccccgtaggttcgcacttgaacgtggaaaacaacgacaaaatcaag
gcgggtcacatcctggctaagattcctcgctccgttggcaaaacacgtgacatcaccggt
ggtctgccgcgtgttaccgaactcttcgaagcccggaacccgtcgaaccccgccgtggta
tcggaaatcgacggcgtagtaacctacggcaccgtgaaacgcggtaaccgtgaaatctac
gtggagtcgaaagacggtgtcaagaagaagtacatggtgccgctgtcgaagcacattctg
gtgcaggacaacgactttatccgcgccggcatgccgctgtcggatggcgccatcacgcct
tcggacatcctgagcattcagggccccggcgccgtgcaggaatacctcgtgaacgagatt
caggaagtataccgcttgcagggtgtgaaaatcaacgataagcacatcgaggtggtagtt
cgccagatgatgcagaaagttgtgattctggatgccggtgacacttcgttcctcgaaaac
caggtgattgataaaatcatcttcatggccgagaacgacatgattatcgacatgaaagtc
gtgaccgaagccggtgattcgacgaacatgaagcccggtcagattgtgaacgcccgcaag
cttcgcgacgagaacagcagcctgaagcgccgtgaccttgccctggtgcaggtgcgcgat
gcccaacctgccgtttcgcgtccgaccctgcaaggcatcacgcaggcttcgttgggtacg
gcctcgttcatctcggccgcatccttccaggagacgaccaaggtgctgagtgaagccgcc
atccgtggcaaggccgaccagctcctgggcttaaaggagaacgtaatcgttggtcacctc
atcccggccggtactggcttgcgcgagtacacgcgtcaggtagtaggctcgaaagaggaa
atggaggctgctcaactagccgccaaggccgccgaggaggttgtacctgccaagcggccc
agccgcgctggcaagcgtgaagtatcggctgagtaa
DBGET
integrated database retrieval system
