Hymenobacter sedentarius: AUC43_15615
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Entry
AUC43_15615 CDS
T04242
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hyg
Hymenobacter sedentarius
Pathway
hyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AUC43_15615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyg03019
]
AUC43_15615
Enzymes [BR:
hyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AUC43_15615
Messenger RNA biogenesis [BR:
hyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AUC43_15615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
AAA_30
Fe-ADH
P-loop_SecA
UvrD-helicase
Utp25_C
ERCC3_RAD25_C
DUF7818
Motif
Other DBs
NCBI-ProteinID:
ALW86388
UniProt:
A0A0U3SJT0
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All DBs
Position
3784217..3785701
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AA seq
494 aa
AA seq
DB search
MTFDDLNLIDPILKALKEEGYTTPTPIQEQAIPHVLEGKDLLGVAQTGTGKTAAFTVPIL
QVLHRTAQVSNHAPRAIRCLVLTPTRELAIQINESFGAYGRHLSQIRHTVIFGGVGQNPQ
VAQLKRGVEVLIATPGRLLDLMNQGFVDLRQVEVFVLDEADRMLDMGFINDIKRILPKLP
AKRQTLFFSATMPGQIQELASTILRPNPVRVAVTPVSSTADTVTQSVYLVETNDKPALLR
HILEDKGIKRVLVFTRTKHGADKVVKALAANQIQAEAIHGNKSQNHRQRALSNFKAGSTR
VLVATDIAARGIDVDELTHVINYEIPNEPETYVHRIGRTGRAGAFGTAFSFVEDEERAYL
QDIQKLISRQIDVEAEHPFTSGRIKPVMLHGNERIIRPKGPAGRPARSGPREGGNGGGGR
SGGGQGGGRPSSQGGGRPSGERSRPAAPAGGGHSDTARRFGSGGARVNVGGNREGGDQGG
RRRGDAGGSRRGSF
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgacgtttgacgatttaaacctgattgaccccatcctcaaagccctcaaagaggaagga
tacaccacccccacccccatccaggagcaagccattccgcatgtgctcgaaggcaaagac
ctcctcggcgtggcccagaccggcaccggcaaaacggcagccttcaccgtgcccatcctg
caggtgctgcaccgcacggcccaggtttcgaaccacgccccgcgcgccattcgctgcctc
gtgctcacgcccacccgcgagctggccatccaaatcaacgaaagcttcggcgcctacggc
cgccacctgagccagattcgccacaccgtcattttcggcggcgtgggccaaaacccgcag
gtagcgcagctcaagcgcggcgtggaagtgctcatcgccacgcccggccgcctgctcgac
ctcatgaaccaaggcttcgtggacctgcgccaggtggaagtgttcgtgctcgacgaagcc
gaccgcatgctcgacatgggcttcatcaacgacatcaagcgcatcctgcccaagctgccc
gccaagcgccagacgctgttcttctcggccaccatgcccggccagattcaggagctggcc
agcaccatcctgcgtcccaaccccgttcgcgtggccgttacgcccgtcagcagcaccgcc
gatacggtgacccagtcggtttacctggttgaaaccaacgacaagcccgccctgctccgc
cacattctggaggacaaaggcattaagcgcgtcctggttttcacccgcaccaaacacggc
gccgataaagtggtaaaagctctggccgccaaccagattcaggccgaagccattcacggc
aacaagagtcagaaccaccgccagcgcgccctgtccaacttcaaggccggcagcacccgc
gtgctggtggccaccgatatcgccgcccgcggcatcgatgtggacgagctgacccacgtt
atcaactacgaaatcccgaacgagcccgaaacctacgtgcaccgcattggccgcaccggc
cgggccggggcgttcggcaccgcgttttccttcgtggaagacgaggagcgcgcttacctg
caggacatccagaagctcatcagccgtcagattgacgtggaagccgagcatccgttcact
tcgggccgcatcaagcccgtgatgctgcatggcaacgagcgcatcattcgtcctaaaggc
ccggctggtcgtccggcccgttccggcccccgcgagggtggcaatggtggcggcggacgt
tccggcggtggccagggcggtgggcgccccagcagccagggcggcggccgccccagcggc
gagcgtagccgtccggcggctccggccggcggtggtcattcggatacggctcgccgcttc
ggcagcggcggtgcccgcgtgaacgtgggtggcaaccgcgaagggggcgaccagggcggc
cgtcgtcggggcgatgccggtggctcgcgccgcggctcgttctag
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