Hymenobacter sedentarius: AUC43_17875
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Entry
AUC43_17875 CDS
T04242
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hyg
Hymenobacter sedentarius
Pathway
hyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AUC43_17875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyg03019
]
AUC43_17875
03400 DNA repair and recombination proteins [BR:
hyg03400
]
AUC43_17875
Enzymes [BR:
hyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AUC43_17875
Messenger RNA biogenesis [BR:
hyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AUC43_17875
DNA repair and recombination proteins [BR:
hyg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AUC43_17875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
HVO_A0114
Motif
Other DBs
NCBI-ProteinID:
ALW86783
UniProt:
A0A0U3K2G6
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All DBs
Position
4375206..4377152
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AA seq
648 aa
AA seq
DB search
MSSPPPETSPLALLREHWGHTAFRPGQEEIIASVLAGHDTLTLLPTGGGKSICFQVPALA
RPGICVVVSPLIALMKDQVDNLRKRGLKAEAIYAGMSHQEIDHALDNCVYGRSVKFLYVS
PERLLTELFQVRVKKMNVGLLAIDEAHCLSQWGYDFRPPYLRIAELREALPAGVPVIALT
ATATAQVQADIVEKLKFRPGFGIFRQSFARPKLSYSVLQTEDKLRRLLEVVRGVGPGKTG
IVYARTRRQTEDTAAFLQQHKFSAAAYHAGLPSDKRTQVQQDWIADKVRLIVATNAFGMG
IDKPDVRLVAHLDAPDTLEAYYQEAGRAGRDGQYAFAVLLAGPNDGDELRRRTNQSFPPL
DTVRRVYQALANYSRTAVGGGELAAFDFELQQFAETYRIKAVDAHNSLKILQREGFVQLN
EAVNTPARVHLVLNHQDLYAFQVANAQHDLLIKSLLRIHGGELFADFQTISENSLATHLR
RSVVEVRQQLRYLHTAGILHYQPRRESPQAMFTTPRFDAPKLPIDQVRMTAARDLARHKT
NAVAQYLVGTRCRQQLLLTYFDETDPARCGVCDMCLAEKKAAQAAAEVASLREPLLQHVR
QAAQTPRQLLAAFAPQQAAAITATLRELVDRGELAYAADGKLQVPAGS
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcccctcctcccgaaacctcgcccctggcgctgctgcgcgagcactggggccac
acggcgttccggccggggcaggaggaaatcattgcctcggtactggcggggcacgatacg
ctgacgctgctgcccaccggcggcggcaagagcatctgcttccaggtgccggccctggcg
cggccgggcatctgcgtggtggtgtcgccgctcatcgcgctgatgaaggaccaggtcgac
aacctgcgcaagcgggggctgaaagccgaggccatttacgcgggcatgagccaccaggaa
atcgaccacgcgctggacaactgcgtgtacggccgcagcgtgaagttcctgtacgtgtcg
ccggagcggctgctcaccgagctgtttcaggtgcgggtaaagaagatgaacgtgggcctg
ctagccattgatgaggcgcactgcctctcgcagtggggctacgatttccggccgccctac
ctgcgcattgccgagctgcgggaggccttgccggcgggcgtgccggtgattgcgctcacg
gccacggccaccgcccaggtgcaggccgacattgtggagaagttaaaattccggccgggc
ttcggcatttttcggcaaagttttgcccggcccaagctgtcatattcggtgctgcaaacc
gaagacaagctgcgccggctgctggaagtggtgcgcggcgtggggcccggcaaaaccggc
atcgtgtacgcccgcacccgccggcagacggaggacacggcggcctttctgcagcagcac
aagttctcggcagcggcctaccacgctgggctgccctccgacaaacgcacgcaggtgcag
caggactggattgccgacaaagtccgcctcattgtggctacgaatgccttcggcatgggc
atcgacaagcctgacgtgcgcctggtggcccacctcgacgcgcccgatacgctggaggcc
tactaccaggaggccggccgcgccgggcgcgacggccagtatgcctttgccgtgctcctg
gccgggcccaacgacggcgacgagctgcgccgccgcaccaaccaatcgtttccgccgctc
gatacggtgcggcgcgtgtaccaggcgctggccaactattcgcgcacggccgtgggcggc
ggtgagctggccgcgttcgatttcgagcttcagcagtttgccgaaacctaccgcatcaag
gccgtggacgcgcacaactcgctcaagattctgcagcgcgaaggctttgtgcagctcaac
gaggccgtgaacaccccggcgcgggtgcacttggtactgaaccaccaggatttgtatgcc
ttccaagtggccaatgcccagcacgacctgctcataaagtcgctattgcggatacacggg
ggcgagctgtttgccgattttcagaccatttcagaaaactccctggccacgcacctgcgc
cgcagcgtggtggaagtgcggcagcagctgcgctacctgcacacggcgggcatcctgcac
taccagccccggcgggagtcgccacaagccatgttcaccacgccgcgcttcgatgccccc
aagctgcccatcgaccaggtgcgcatgacggcggcccgcgacctggcccgccacaaaacc
aacgccgtggcccaatacctggtgggcacgcgctgccgccagcagttgctgctcacgtat
ttcgacgaaaccgacccggcccgctgcggggtctgcgacatgtgcctggccgaaaaaaaa
gcagctcaggccgccgcggaggtggcttcgctgcgggagccgttgcttcagcacgtgcgg
caagctgcccaaacgccgcgccagctgctggcagctttcgcgccgcagcaagccgctgcc
attacggccacgctgcgcgagttggtggaccggggcgagctggcctatgccgccgatggc
aaattgcaggtgccggccggctcgtag
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