Hymenobacter sedentarius: AUC43_18940
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Entry
AUC43_18940 CDS
T04242
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hyg
Hymenobacter sedentarius
Brite
KEGG Orthology (KO) [BR:
hyg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hyg03016
]
AUC43_18940
Enzymes [BR:
hyg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AUC43_18940
Transfer RNA biogenesis [BR:
hyg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AUC43_18940
Prokaryotic type
tRNA splicing ligases
AUC43_18940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ALW86972
UniProt:
A0A0U4AFH1
LinkDB
All DBs
Position
complement(4647579..4648979)
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AA seq
466 aa
AA seq
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MANQLRGNDLRKIGFPEGPAIGRALDVLAQKDFRKMDKGSALALLKQIKDDPFKYVRDEN
WRPVAELLVPQPSRNVALNPEIKDYRRYGNDFIEDGARRQMDVAMQLPITLDGALMPDAH
QGYGLPIGGVLATDNAVIPYGVGMDIGCRMALSVFELPPAYLEQRRQELRKLLLHNTKFG
NKEVFSKVNTDDPIFERPEFREIAVARQKLDSAVKQLGSSGSGNHFVEFGMVDITDPTND
LHLPVGQYLGVLSHSGSRGLGAAIAQHYTKVAMDKCPLPPEARHLAWLSLDSQEGQEYWA
AMNLAGDYASACHHDIHKRISKALGEKPLAQVENHHNFAWKEVLADGRTAIVHRKGATPA
GQGVLGIIPGSMTAPGFIVRGRGERDSLSSASHGAGRRLSRTQAKAKITEGELRRELRDH
GVELMGGGLDEAPAAYKDIRQVMAHQRDLVDVLGSFTPKIVRMDGA
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggccaaccagctccggggcaacgacctccgcaaaatcggctttcccgaaggccccgcc
attggccgcgccctcgacgtgcttgcccaaaaggactttcgcaaaatggacaaaggcagc
gccctggccttgctcaagcaaatcaaggacgacccgtttaagtatgtgcgcgacgaaaac
tggcggcccgtggccgagctgctggtgccccagccctcgcgcaatgtggccctgaatccc
gaaataaaagactatcgccgctacggcaacgacttcatcgaagatggcgcccgccggcaa
atggacgtggccatgcagctgcccatcaccctcgacggtgccctcatgcccgacgcccac
cagggctacggcctgcccattggcggcgtgctggccaccgacaacgccgtgattccctac
ggcgtgggcatggacattggctgccgcatggccctatcggtgtttgagctgccgcccgcc
tacctcgagcagcgccgccaggagctgcgcaagctgctgctgcacaacaccaagtttgga
aacaaagaggtgttcagcaaggtgaacaccgacgaccccatcttcgagcggcccgagttc
cgggagattgccgtggcccgccagaagctggattcggcggtgaagcagctgggttcgtcg
ggctccggcaaccacttcgtggagttcgggatggtcgacatcaccgaccccaccaacgac
ctgcacctgcccgtgggccagtacctgggcgtgctctcgcacagcggctcgcgggggctg
ggggcggccattgcgcagcactacaccaaagtggccatggacaaatgccccctgccgccc
gaagcccgccacctggcctggctctcgctcgactcgcaggaggggcaggagtactgggcg
gccatgaacctggccggcgactacgcctcggcctgccaccacgacattcacaagcgcatc
agcaaagccctgggcgaaaagcccctggcccaggtcgagaaccaccacaacttcgcctgg
aaggaggtgctggccgacgggcgcaccgccattgtgcaccgcaaaggggccacgcccgcg
ggccagggcgtgctcggcatcattcccggctccatgacggcccccggcttcatcgtgcgg
ggccgcggcgagcgggattcactcagctcggcctcgcacggcgcgggccggcgcctctcg
cgcacgcaggccaaggccaagattaccgaaggcgaactgcgccgcgaactgcgcgaccac
ggggttgagctgatgggcggcggcctcgacgaagcccccgccgcctacaaagacatccgc
caggtaatggcccaccagcgcgacctggtggacgtgttgggctcgtttactccgaaaata
gtgcgcatggacggcgcttaa
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