Hymenobacter oligotrophus: D3Y59_03670
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Entry
D3Y59_03670 CDS
T05656
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hyh
Hymenobacter oligotrophus
Pathway
hyh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D3Y59_03670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyh03019
]
D3Y59_03670
Enzymes [BR:
hyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D3Y59_03670
Messenger RNA biogenesis [BR:
hyh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D3Y59_03670
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AYA36241
UniProt:
A0A3B7R3L4
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All DBs
Position
complement(877011..878435)
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AA seq
474 aa
AA seq
DB search
MTFDDLQLLPELLTALHATGYESPTPIQQQAIPYVLDARDLLGVAQTGTGKTAAFTLPLL
QRLHLSRPTNQPSGPRAVRSLILTPTRELAIQIGESFATYGQNLKLRHAVIFGGVSQHPQ
VEALRRGTDVLIATPGRLIDLINQGYVDLKRLEIFVLDEADRMLDMGFINDIRRILPLLP
KQRQSLFFSATMPPTIQQLADSILRNPQQVAVTPVSSTAEKVEQAVYMIEKTDKPYLLLE
VLSNPELRRVLVFTRTKHGADRVAKGLTAKGIVAEAIHGNKSQNARQRALQNFKSGETRV
LVATDLAARGIDVDELSHVVNYELPNEPETYVHRIGRTGRAGAEGMALSFCDAEERAYLQ
DIQRLINREIRVVDNHSYANNDVAPVPLKGPNITKPKGPAGRPPRPGRGGATGGAGSKAA
RGAGAGHARPATAPRHNQDSRSKASSPGQSAPVAGTGKPRPNNNSRPGRRRRRD
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
ttgacatttgacgacctccaactgctgccagagctgctgacagctttgcacgccacgggc
tacgaaagccccacccctattcagcaacaagccattccgtacgtgctcgatgcgcgcgat
ttgcttggcgtagcccaaaccggcaccggcaaaacggcggccttcacgctgccgctgctg
caacgcctccacctctccaggcccaccaaccaacccagcggcccgcgtgccgtgcgctca
ctcatcctgacgcccacgcgcgagctagctatccaaatcggcgaaagcttcgccacctac
ggtcaaaacctgaaactgcgccacgccgtgattttcggcggcgtaagccagcacccgcag
gtagaggccctgcggcgcggcaccgatgtgctcattgccacacctggccgcctgatcgac
ctgatcaaccaaggctacgttgacttgaagcgcctggaaatattcgtgctcgatgaagcc
gaccgcatgctcgacatgggtttcatcaacgacatccggcgcattttgcccttgctgccc
aagcaacgacagtcgctgtttttctcggccaccatgccgcctaccattcagcaactggcc
gacagcattttgcgcaacccgcagcaagtagccgttacgcccgtttcgagcactgccgaa
aaggtggagcaagcggtgtatatgatcgagaagaccgataagccctacctgctgctcgag
gtgctcagcaacccggaactgcgccgcgtgttggtcttcacacgtaccaagcacggcgcc
gaccgcgtagctaagggcctcaccgcaaaaggcattgtggccgaagccatccacggcaac
aagtcgcagaacgcacgccaacgggcgctacagaactttaagagcggcgaaacgcgggtg
ctggttgctaccgacctagcggctcgcggtatcgacgtggatgagctaagccacgtggtg
aattatgagctgcccaacgagcccgaaacgtacgtgcaccgcattgggcgcacgggccgc
gccggcgccgaaggcatggcgctttctttctgcgatgcggaggaacgggcttacctgcaa
gacattcagcggttgatcaaccgcgagattcgggtagtagacaaccactcctacgccaac
aacgacgtagcgccggtgccgctcaaaggtcccaacattaccaaacccaaaggcccggcg
ggccgtccgccccgccccggacggggtggcgccaccggcggcgctggcagcaaggcagcc
cgcggtgcgggggccggccacgcccgccctgccacggctccgcgccacaatcaggatagc
cgcagcaaggcttcttccccaggccaaagcgctccggttgccggaacgggtaagccccgc
cccaataacaatagccgccctgggcgccgtcgccggcgcgactaa
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