Hymenobacter oligotrophus: D3Y59_04685
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Entry
D3Y59_04685 CDS
T05656
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hyh
Hymenobacter oligotrophus
Brite
KEGG Orthology (KO) [BR:
hyh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyh03032
]
D3Y59_04685
03400 DNA repair and recombination proteins [BR:
hyh03400
]
D3Y59_04685
Enzymes [BR:
hyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
D3Y59_04685
DNA replication proteins [BR:
hyh03032
]
Prokaryotic type
DNA Topoisomerases
D3Y59_04685
DNA repair and recombination proteins [BR:
hyh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
D3Y59_04685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AYA36414
UniProt:
A0A3B7QX76
LinkDB
All DBs
Position
complement(1118394..1119509)
Genome browser
AA seq
371 aa
AA seq
DB search
MASAQTTLRTKVKKKKLMPVDTDVHELYKDPAMQAELAGLRYVTDTKPGIARQPGRDGAY
TYLDAKGQPVADEKIMGRINGMVIPPAWTEVWIAPTANAHLQATGRDTKGRKQYIYHPLW
DQARSLTKFSRLRAFGEKLPELRQRIRKDLGRPKLDKQKVVAVVLTLMDQSFIRVGNREY
AKKNKSYGLTTLRDKHVKVDGADIRFSFVGKKGVAHDVTLHDRKLARLVQKCKEIPGQHL
FQYFDADGHRQELESGDVNEYLREATGLALSAKDFRTWGGTVKMVECLESVLHEEPDLPK
DKVLKKAVKDVAKNLGNTPTVCSKYYIHPQVVELFTSDKLIDYLRRHDADPTENDLLSPT
EHLVLDMLSEV
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgcccaaaccacccttcgcaccaaagtcaaaaagaaaaagctgatgcccgtt
gacaccgacgtgcacgagctttacaaagaccccgccatgcaagccgagctggctggcctg
cgctacgtaaccgataccaagcccggcattgcgcgccaacccggccgcgacggcgcttac
acctacctcgacgcgaagggccaacccgtggccgacgaaaaaataatgggccgcatcaac
ggcatggtgatacccccggcctggacggaggtatggattgcgcccacggccaacgcccac
ctgcaagccaccggccgcgacaccaagggccgcaagcaatacatctaccacccgctctgg
gaccaggcacgcagccttaccaaattcagccgcttgcgggctttcggcgaaaagctgccc
gaactgcgccagcgcattcgcaaggacctaggtcggcccaagctcgacaagcagaaagta
gtggccgtagtgcttacgctgatggaccagtcgtttatcagggtgggcaaccgcgagtac
gccaagaaaaacaagagctacggcctaacgacgctgcgcgacaagcacgtgaaagtagac
ggcgctgatattcgcttcagctttgtgggcaaaaaaggcgtggctcacgacgtaaccctg
cacgaccgtaagctggcccgcctggtgcagaagtgcaaggaaatacccggtcagcacttg
tttcagtattttgatgccgacggccaccggcaggagctggaatcgggcgacgtgaacgaa
tacctgcgcgaggccaccggactggccctttcggccaaagacttccgcacctggggcggc
accgttaaaatggtggaatgcctcgaaagcgtgctgcacgaggaacccgatttgcccaag
gacaaagtgctgaaaaaagccgtaaaggacgtggccaaaaacctcggcaacacgcccacc
gtgtgctccaagtactatatccatccgcaagtagtagagctgttcacctcggataagctc
atcgactacttgcgccgccacgacgccgaccccaccgaaaacgacctactgtcgcctacc
gagcacttggtgctcgacatgctctccgaagtttag
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