Hymenobacter oligotrophus: D3Y59_05905
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Entry
D3Y59_05905 CDS
T05656
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hyh
Hymenobacter oligotrophus
Pathway
hyh03420
Nucleotide excision repair
hyh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hyh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D3Y59_05905
03430 Mismatch repair
D3Y59_05905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyh03400
]
D3Y59_05905
Enzymes [BR:
hyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D3Y59_05905
DNA repair and recombination proteins [BR:
hyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D3Y59_05905
MMR (mismatch excision repair)
Other MMR factors
D3Y59_05905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
ResIII
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AYA38820
UniProt:
A0A3B7R647
LinkDB
All DBs
Position
1391878..1394118
Genome browser
AA seq
746 aa
AA seq
DB search
MDYISLLNESQRGAVLHTEGPAMIIAGAGSGKTRVLTYRIAHLLEKGVDPFNILALTFTN
KAAREMRARIEKVVGPEAKNLWMGTFHSIFARILRSEADKLGFPRHFTIYDTQDTKTLVS
QIVKELDLDDKLYKPSTVLGRISAAKNKLISVQQYLNDPVIRQDDEAAMRPKIGVIYQQY
QQRCFKAGAMDFDDLLYQTNVLFKDHVDVLNKYQNIFHHVMVDEYQDTNYSQYLITRKLA
AKNRNICVVGDDAQSIYAFRGADIQNILNFEKDYPELAVFKLEQNYRSTKNIVKAANSVI
KNNQAQLRKSVFSDNEEGPRIEVIRAASDNEEGRLVANSIYEDKMNHHLSYEDFAILYRT
NAQSRAMEEALRKLNIKYKIVGGLSFYQRKEIKDLVAYLRLTVNPNDEQALRRVINYPKR
GIGDTTISKLINSADEANETLWDVVANAEKFLPARVSNPVVGFAEQIKSYAVVAGKDDAF
EAAKFIAKNSGMIEDLYADKSIEGLSRYENIQELLNGIKEYVDDPEREDKSLASFLQDIA
LVTDTDLKDAKDDGESVTLMTIHSAKGLEFRNVYIVGMEENLFPSQMMITSRADLEEERR
LFYVAITRAEKKLTLSYATSRYQWGNLRSCEKSRFIDEIDPTYVDFKYGTEESPFAPVLE
RRSNLVGAQKIKPAAAPIKPYVPSADFKPSDTSNLAAGNKVEHPKFGFGTVTKMENQAGQ
TKATIQFEGGVGEKTLLLSFAKLRIL
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
ctggattatatttccctactgaacgagtcgcagcgcggcgcggtgttacacaccgaaggc
ccggcgatgattattgcgggtgcgggttcgggcaaaacgcgggtactcacctaccgcatt
gctcacttgctggagaagggcgtcgacccgttcaacatcctggcccttacgtttaccaac
aaagccgcgcgcgaaatgcgggcgcgtatcgagaaggtggtaggccccgaggcgaagaac
ctttggatgggcaccttccacagcatcttcgcccggattttgcgttcggaagccgataag
ctgggctttccgcgccacttcaccatttacgacacgcaggacactaaaaccctcgtttcg
cagattgtcaaagagttggacctcgatgacaagctgtacaagcccagcaccgtcctaggt
cggatttcggcggccaagaacaagctcatttcggtgcagcagtacctcaacgaccccgtt
attcggcaggacgacgaggccgccatgcgcccgaaaattggggtgatttaccagcagtac
cagcagcgctgcttcaaggccggcgccatggacttcgacgacttgctgtaccaaaccaac
gtgctctttaaggaccacgtggatgtgctcaacaagtaccagaacatctttcaccacgtg
atggtggacgagtaccaggataccaactactcgcagtacctgattacgcgtaagctggcg
gccaaaaaccgcaacatttgcgtggtgggcgacgacgcgcaaagcatctacgctttccgc
ggcgctgatattcagaacattctcaacttcgagaaagactaccccgagctagctgttttc
aagcttgagcaaaactaccgctccaccaaaaacatcgtaaaggcggcaaactcggttatc
aaaaacaaccaggcgcaattgcgcaaaagtgttttctccgacaacgaggaaggcccgcgc
atcgaagtgatccgcgccgcttcggacaacgaagaaggccgcttggtggctaacagcatc
tacgaggacaagatgaaccaccatctgtcctacgaagactttgctatcctgtaccgcacc
aacgcgcaaagccgcgcgatggaagaagccctgcgcaagctcaacatcaagtacaagatt
gtgggcggcctgagcttttaccagcgtaaggaaatcaaggacttggtggcttacctgcgc
ctgacggtaaacccgaacgacgagcaggcgctgcgccgggtgattaactaccccaagcgc
ggcatcggcgatacgaccatcagcaagctgattaactcggccgacgaagccaacgaaacg
ctgtgggacgtggtggccaatgccgagaagttcttgccggcgcgggtatcgaacccggtg
gtaggctttgccgagcagatcaagagctacgccgtggtagctggcaaggacgatgcgttt
gaggccgctaagttcattgccaaaaactcgggcatgatcgaggacttgtacgccgacaaa
agcattgagggcttgtcgcgctacgagaacattcaggaattgctgaacggtatcaaggag
tacgtcgacgaccccgagcgcgaggataagtcgctggcttcgtttctgcaggacattgcc
ctggttaccgacaccgacctgaaggatgccaaagacgacggcgagtcggtaacgttgatg
accatccactcggccaaggggttggagttccgcaacgtgtacatcgtgggcatggaagag
aacctcttcccctcgcaaatgatgattacctcgcgggccgacctggaggaagagcgccgc
ctgttttacgtggccattacccgcgccgagaagaagctgacgctgagctacgccacctcg
cgctaccagtggggcaacttgcgcagctgcgagaaaagccgctttatcgacgaaatcgac
cccacgtacgtcgattttaagtacggcaccgaagaaagccctttcgcgccggtgctggag
cgccgttcgaatttggttggtgcgcagaagattaagcccgccgccgccccgataaagccc
tacgtgccctcggccgactttaagccctcggacactagtaacctagccgccggcaacaag
gtggaacatcccaaatttggctttggtacagttaccaaaatggaaaaccaggccggacag
acgaaagccaccattcagtttgaaggcggcgtaggagagaaaaccttgctattgagtttc
gctaagctccgcatcctgtaa
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