Hymenobacter oligotrophus: D3Y59_05965
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Entry
D3Y59_05965 CDS
T05656
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hyh
Hymenobacter oligotrophus
Brite
KEGG Orthology (KO) [BR:
hyh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyh03032
]
D3Y59_05965 (topA)
03400 DNA repair and recombination proteins [BR:
hyh03400
]
D3Y59_05965 (topA)
Enzymes [BR:
hyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
D3Y59_05965 (topA)
DNA replication proteins [BR:
hyh03032
]
Prokaryotic type
DNA Topoisomerases
D3Y59_05965 (topA)
DNA repair and recombination proteins [BR:
hyh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
D3Y59_05965 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
PadR
Motif
Other DBs
NCBI-ProteinID:
AYA36642
UniProt:
A0A3B7QZ05
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Position
1407953..1410391
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AA seq
812 aa
AA seq
DB search
MVKNLVIVESPAKAKTIEGYLGKDFVVKSSFGHVRDLPKDNNAIDIQNGFKPTYVVSPDK
REVISQLKKLAKEAETVWLASDADREGEAISWHLAETLDLTNDKTRRIVFRELTKNAILN
AIDSPREIDLNLVNAQQARRVLDRLVGFELSPVLWKKVKTGLSAGRVQSVAVRLVVERER
EIQQFKTSSAYRVVARFDAGNGAVLEAELPQRLKTLEEAEAFLARCAGAAYRIETLEKKP
GKRSPAPPFTTSTLQQEASRKLGFSVAQTMSVAQRLYEGGKISYMRTDSVNLSQEALTGA
KAEISRAYGPEYSHTRQFKTKAASAQEAHEAIRPTDFSLVKAGEDSAEQRLYDLIRKRAM
ASQMADAEIERTVATIGISTQPGVTLTATGEVITFEGFLKAYSESKDEDENDGESSFSRG
LPPLSVGQQLPLQRLSATERYAQPPARYTEASLVKKLEEMGIGRPSTYAPTISTIQKRGY
VEKDTREGKERKFHVLTLDGEQVNTEVKTEVYGADRGKLFPTDTAMVVNDFLVEHFPLII
DYSFTAKVEEEFDRIAEGQEAWEHMIAGFYGTFHETVERGKEVERADVGTTRLIGDHPET
GDKIYAKLGRFGPYVQLGEAEGETKPAYANLRKGQFIETLTLEEALELFKLPRVVGQFEE
KDMTAAIGRFGPYIRHDSKFYSLAKGQDPHTVTPEEAVQLIAEKRKQEAEKVILTFEPEG
RADVQVLNGKYGPYIVCGGKNVKIPKGEEPRSLSLERCLELAEATPDKPSRGRFGAKKAA
APAAKAPAKKADGAAKKPAAKKATGTAKKAAK
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggttaagaacctcgtcatcgtggagtcgcctgccaaagccaaaaccatcgagggctac
ctaggcaaagactttgtcgttaagtcaagcttcgggcacgtacgcgatttgccaaaggac
aacaacgccattgatatccagaacggcttcaagccaacctacgtcgtttcgcccgataag
cgcgaggtaatttctcagctgaagaagctggccaaggaagcggaaacggtgtggctagca
agcgacgccgaccgcgagggcgaagccatttcgtggcacttggccgagaccctcgaccta
accaacgacaaaacccggcgcatcgtgttccgggagttgacgaagaacgccattctgaac
gccatcgattcgccccgcgaaatcgacctgaacttggtaaacgcccagcaggctcgccgc
gtgctcgaccgcctcgtgggcttcgagttgtcgccggtgctttggaagaaggtaaaaacc
gggttgtcggcgggccgcgtgcagtcggtggcggtgcgcttggtggtggagcgcgagcgt
gaaattcagcagtttaaaacgtcgtcggcgtaccgcgtggtggcgcgcttcgacgccggc
aacggtgccgtgctcgaagccgagttgccccagcgcctaaagacgctggaggaagcagaa
gcctttttggcgcgttgcgccggtgcggcataccgcatcgaaacgctcgaaaaaaagccg
ggcaaacgcagccctgcgccgccctttaccacatcgacactgcagcaggaagcttcgcgc
aagctgggcttttcggtggcgcaaaccatgagcgtggcgcagcgcttgtacgaaggcggc
aaaatcagctacatgcgtaccgactcggtgaacctgtcgcaggaagccctgacgggcgcc
aaagccgaaattagccgcgcttatggccctgagtattcgcacacccggcagttcaaaacc
aaagccgcctcggcccaggaagcgcacgaagctattcgccccaccgatttttcgttggta
aaagccggcgaagactcggccgagcaacgcctctacgacctcattcgcaagcgcgccatg
gcctcgcaaatggccgacgccgagattgagcgcacggtggctaccatcggcatcagcacg
cagcccggcgtaacgctcacggccacgggcgaggtgattacgtttgagggttttctgaaa
gcctacagcgagtcgaaagacgaagatgaaaacgacggcgaatcgtcgttttcgcgtggg
ttgccgcccctaagcgtgggccagcaactgccgctgcagcgcctatcggccacggagcgt
tacgcgcagccaccagcccgctacaccgaagcttcgttggtgaaaaagctggaggaaatg
ggtatcggtcggccatcgacgtacgcacccaccattagcaccattcagaagcgcggctac
gtagaaaaagacacccgcgaaggcaaggagcgcaagttccatgtgctcacgctcgacggc
gagcaggtgaacacggaagtcaagacggaagtgtacggcgccgaccgcggcaagctgttc
ccgacggacacggctatggtggtgaacgactttttggttgagcacttcccgctgatcatc
gactactctttcacggctaaagtggaagaagaattcgaccgcattgccgaaggacaagag
gcttgggagcatatgattgcgggcttctacggcacgttccacgaaaccgtggagcgcggc
aaagaagtggagcgcgccgacgtgggcaccacccgcctgattggcgaccaccccgaaacc
ggcgataaaatttacgctaagctgggccgctttggaccctacgttcagctgggcgaagcc
gaaggcgaaaccaagccggcgtacgccaatctgcgcaaaggccagttcattgaaacccta
acgctggaggaggcgctggagttatttaagttgccgcgcgtggtaggccagttcgaggaa
aaggacatgacggctgccatcggccgcttcggcccatacatccgccacgacagcaagttt
tactcgcttgccaaaggccaggacccgcacaccgtaacgcccgaagaagccgtacagctg
attgcggaaaagcgtaagcaggaggccgaaaaagtaattctgacgtttgagcccgagggc
cgggccgacgtgcaggtgctcaacggcaaatacggcccgtacatcgtgtgcggtggcaaa
aacgtgaagatcccgaagggcgaagaaccccgcagcctttcgctggagcgctgcctggag
ctggccgaagccacgcccgacaagcccagccgcggccgttttggggccaaaaaggctgcg
gcacccgcggccaaagccccggccaaaaaagccgatggcgcagccaaaaagcccgctgct
aaaaaagctacgggcacggccaaaaaagccgctaagtaa
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