Hymenobacter oligotrophus: D3Y59_09665
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Entry
D3Y59_09665 CDS
T05656
Name
(GenBank) helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hyh
Hymenobacter oligotrophus
Pathway
hyh03420
Nucleotide excision repair
hyh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hyh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D3Y59_09665
03430 Mismatch repair
D3Y59_09665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyh03400
]
D3Y59_09665
Enzymes [BR:
hyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D3Y59_09665
DNA repair and recombination proteins [BR:
hyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D3Y59_09665
MMR (mismatch excision repair)
Other MMR factors
D3Y59_09665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
Viral_helicase1
UvrD_C
AAA_19
UvrD_C_2
DEAD
SLFN-g3_helicase
AAA_30
AAA_16
NACHT
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
AYA37294
UniProt:
A0A3B7QZJ5
LinkDB
All DBs
Position
complement(2258156..2260219)
Genome browser
AA seq
687 aa
AA seq
DB search
MPKPPVINATEQEEREYLEEIKEQLTLAVKRVDDAVRQFSGELRQQKQYLHEHQSGLDEA
DMVAAGQSIDRMAFTGTAAVARRRRLLKLVQSPYFGRLDFVTPNQVSTPVYIGVHSFLDE
RTHQNRIYDWRAPISSLFYDFELGEASYDSPTGPVPGRIALKRQYRIRDGRMEFMLDSDV
NIHDDVLQRELAKSSDDKMKNIVATIQRDQNAVIRNEDATVMVIQGVAGSGKTSIALHRI
AFLLYRFRDTIAAKDILIISPNKVFADYISNVLPELGEEHIPELGMEELAADLLQGQFRF
QTFFEQVAALLERHDAAFIERIRFKSSAEFLSQLNQYLLHVENNYFSVADLRVGRTVVPG
AFIQQKFKAYHRVPLLRRFGQVANDVRAYVRDKVDRKLTGGEKATIGEGIPRMFRYANVL
EFYRDFYRWVGRPDLLKLDPQRPLEYADVFALIYLRIRMEGLAGYDHVKHLLVDEMQDYT
PVQYAVLSRLFHCRKTILGDVSQTVNPYSASSAETIERVFPQADVVRLNRSYRSTLEITA
FAQRISPNPHIMPLERHGPEPAVVRYASPAEELQAVQELVAAFRSSGNHSLGIICKTQRQ
AAQVHEALQGPGVYLLTEESTAFKEGVIVTTAHLAKGLEFDEVIVPFASARNYRTEVDKS
MLYVACTRAMHRLTLTYTAEPTAFLSA
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagccgccagtgattaacgccaccgaacaagaagaacgcgagtacctcgaggag
attaaagagcagctgacgctggcggtaaagcgcgtggatgatgcggtgcggcagttttcg
ggcgagctgcgccagcaaaagcaatacctgcacgagcaccaatcgggcctcgacgaggcc
gacatggtggccgccgggcaatccatcgaccgcatggcctttacgggcacggcagccgtg
gcccggcgccgccggctgcttaagctggtgcagtcgccgtacttcggccgcctcgatttt
gtgacaccgaaccaggtgagcacgccggtgtacatcggggtgcattcgtttttggatgag
cggacgcaccaaaaccggatttacgattggcgggcgcccatttcttcgctgttctacgat
tttgagctgggcgaggcgtcgtacgacagtccaacgggccccgtgcccgggcgcattgcc
ctgaagcggcagtaccgcatccgcgacgggcgcatggagttcatgctcgacagcgacgtg
aacatccacgacgacgtgctgcagcgcgagctggccaagtcgtcggacgacaagatgaag
aacatcgtcgccacgattcagcgcgaccagaacgcggttatccgcaacgaggacgcgacg
gtgatggtcattcagggggtggccggctcgggcaaaacctccattgccttacaccgcatt
gcctttttgctctaccgcttccgcgacaccattgcggccaaggacatcctcatcatctcg
cccaacaaggtattcgccgactacatcagcaacgtgctgcccgagctgggcgaggagcac
attccggagctgggcatggaggagctggccgccgatctgctccaggggcagttccggttc
cagacgtttttcgagcaggtagcagccttgctcgagcggcacgatgcggccttcatcgag
cggattcggtttaagtcgtcggcggagtttttgagccagctaaaccagtacctgctgcac
gtcgagaacaactacttcagcgtggccgacctgcgcgtgggccgcaccgtggtgccgggg
gcgtttattcagcaaaagtttaaggcctaccaccgcgtgccgctgctccggcgctttggg
caggtggccaacgacgtgcgtgcgtacgtacgcgacaaagtggaccgcaagctcacgggc
ggcgaaaaagccaccatcggggagggcataccgcgcatgttccggtacgcgaatgtgctg
gaattttaccgcgacttttaccgctgggttggccggcccgatctgctcaagctcgacccg
cagcggcccctggagtacgccgacgtgtttgccctgatttacctgcgcattcgcatggag
ggcctcgccggctacgaccacgtaaagcacttgctcgttgacgaaatgcaggactacacc
ccggtgcaatacgccgtgctgtcgcgcctgttccactgccgcaaaaccattctgggcgac
gtcagccaaacggtgaacccgtacagcgcctcctcggccgaaaccatcgagcgcgtgttt
ccgcaggccgacgtggtgcggctgaaccgcagctaccgctccacgctggaaattaccgcc
ttcgcgcagcgcatcagccccaacccgcacatcatgccgctggagcgccacggtccggag
cccgccgtggttcgctacgccagcccggccgaggagctgcaggccgtgcaggaactggtg
gcagccttccgcagctccggtaaccattccctaggtatcatttgcaaaacccagcggcag
gcagcgcaggtgcacgaggcgctgcagggccccggcgtgtatttgcttaccgaggagtca
acggctttcaaggaaggcgtcatcgttaccactgctcatttggccaaggggctcgagttc
gacgaggtgattgtgccctttgcctcggcgcgcaactaccgcaccgaggtagataaaagc
atgctgtacgtggcctgcacccgcgccatgcaccgcctcacgctcacgtacaccgccgag
ccgacggccttcttgtcggcttaa
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