Hymenobacter oligotrophus: D3Y59_13615
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Entry
D3Y59_13615 CDS
T05656
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hyh
Hymenobacter oligotrophus
Pathway
hyh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D3Y59_13615 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyh03019
]
D3Y59_13615 (rnr)
03016 Transfer RNA biogenesis [BR:
hyh03016
]
D3Y59_13615 (rnr)
Enzymes [BR:
hyh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D3Y59_13615 (rnr)
Messenger RNA biogenesis [BR:
hyh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D3Y59_13615 (rnr)
Transfer RNA biogenesis [BR:
hyh03016
]
Prokaryotic type
tRNA degradation factors
D3Y59_13615 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
Motif
Other DBs
NCBI-ProteinID:
AYA38950
UniProt:
A0A3B7R6J8
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All DBs
Position
3183717..3186293
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AA seq
858 aa
AA seq
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MRRNHDSADAPRPSRDPARRRDAAAPAPLSKTQVFRIFSENPGKVFSYRQISRRLGVVSK
EQREEVFHYLKDLKRSGHIALLQNDDYRLVELPGRSFNERPDNDKPARDRGPKRGKFDPG
FVAELGQEPVTHRRRTPGFDFPGTTDRTHRPGNYRHRENGAGGQEITGTVDLANNKYAYI
VSEELSEDLRVYTDRLGFALDGDTVRVRLGKARDGRPSGDVVEVVERRKEEVVGRLMMQA
GFGFVQPDNKRIYFDVFVPGHAFADAKNGDKVLVKITEWPDEFGRQPVGEVLRSFGAAGE
HEAEIHAIMAEFGLPFEFPEEVEREANEIPANISAEEIAKRRDFRDITTFTIDPVDAKDF
DDALSLRKLENGNWEVGVHIADVTHYVLPGTRLEKEAHWRATSVYLVDRTIPMLPERLSN
GLCSLRPHEDKLTFSAVFELDEQGKLYDAWFGRTVIHSDRRFTYEEAQERIESGEGDFAD
EVNLLNRIAKELQAARFRKGAISFEAPEVKFKLDEHGKPVGVYVKERKDAHKLIEEFMLL
ANRKVAEFVYRLKKTKPRFTMVYRTHNAPDPERLENFALFARQFGYDLNLGEDANVSKEL
NKLTAEVEGKPEQSVIQALAVRSMAKAIYTTEALGHFGLAFDHYSHFTSPIRRYPDMMAH
RLLEHYLQGGKNVDAEELEEDCKHSSEREKRAAQAERASIKYKQVEFMAEHVGETFTGVV
SGLTEWGLYVEMGETKSEGMARLADIQEDFFELDKENLRIIGRNTGRIIRFGDEVKVIIK
AANLLDRTIDLELVSLPRNAGRAARPREEFGDRAPRQRPSGRGVAGGTGGDGRSRREGGR
SASDKPKPKGKGRSRYHG
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgagaagaaaccatgactcggccgatgcgccgcgcccctcgcgcgacccggcccgccgc
cgtgatgcagccgctccggctcccctgtcgaaaacccaagtgttccggattttttccgag
aacccaggcaaggtgttcagctaccgccagatttcgcgccgcctaggtgtcgtgagcaaa
gagcagcgcgaggaggtgtttcactacctcaaggaccttaagcgaagcgggcacattgcc
ttgctccagaacgacgattaccgcctggtggagctgccgggtcgctccttcaacgagcgc
cccgacaacgacaagcccgcccgcgaccgtggccccaagcgcggcaaatttgaccccggc
tttgtggccgaattgggccaagagcccgtgacgcatcgccgccgcacgcccggcttcgac
ttccctggcaccaccgaccgcacccaccgccccggcaactaccggcaccgcgagaatggc
gccggcggacaggaaattaccggcaccgtcgacctggccaacaacaagtacgcctacatc
gtgagcgaagagctcagcgaagatctgcgcgtgtacaccgaccgccttggctttgccctc
gacggtgacaccgtgcgggtgcgcctaggcaaagcccgcgacggccgcccctcgggcgac
gtggtggaggtagtggagcgccgcaaggaagaagtagtcggccgcctgatgatgcaggct
ggcttcggctttgtgcagcccgacaacaagcgcatctacttcgatgtgtttgtgcccggc
cacgcgtttgccgatgccaagaacggcgacaaagtgctcgtgaagattaccgaatggccc
gacgagtttggccgccagccggtgggcgaagtgctgcgcagctttggcgcggccggggag
cacgaggccgagatccacgccatcatggcggagttcggtttgcccttcgagtttcccgaa
gaagtagagcgcgaggccaacgaaattccggccaacatctcggccgaggaaattgccaag
cgccgcgacttccgcgacatcaccactttcaccatcgaccccgtcgatgccaaagacttc
gacgatgccctctccttgcgcaagctcgagaacggcaactgggaagtaggtgtgcacatc
gccgacgtgacgcactacgtgctgcccggcacccgcctcgagaaggaagcccattggcgg
gccacctcggtctacctcgtcgaccgcaccatcccgatgctgcccgagcgcctctccaac
ggcctatgctcgctgcgcccacacgaagacaagctgactttctcggccgtgttcgagctc
gacgagcaaggcaagctctacgacgcgtggtttggccgcaccgtgattcactccgaccgc
cgcttcacttacgaggaggcgcaggagcgcattgagtcgggcgagggcgactttgccgac
gaggtaaacctgctcaaccgcattgccaaggagttgcaggcggcccgtttccgcaagggc
gccatcagctttgaggctcccgaggtgaagtttaagctcgacgagcacggcaagcccgtg
ggcgtgtatgtgaaggagcgcaaggacgcgcacaagctgattgaggagtttatgctgctc
gccaaccgcaaagtggctgagtttgtgtaccgcctcaaaaagacgaagccgcgcttcacg
atggtataccgcacccacaacgcccccgaccccgaacggctcgagaacttcgcgctgttt
gcccgccagtttggctacgacctgaacctaggcgaagacgccaacgtgagcaaggagctg
aacaagctgactgctgaggtagaaggcaagcccgagcagtcggtgattcaggcgctggcc
gtacgctccatggccaaggctatttacaccaccgaagccctaggtcacttcggcctggct
ttcgaccactactcgcacttcacctcgcccatccgtcgctaccccgacatgatggcccac
cgcctgctcgagcactacctgcagggcggcaagaacgtggatgccgaggagctagaagaa
gactgcaagcactcttcggaacgtgagaagcgggctgcccaagccgagcgcgccagcatc
aaatacaagcaagtcgagtttatggccgagcatgtaggcgaaacgttcaccggcgtggtt
tcgggccttaccgagtggggcctgtacgtggagatgggcgaaaccaagagcgaaggaatg
gcccgcctggccgatattcaggaagactttttcgagctcgacaaggagaacctgcgcatt
attggccgcaacacgggccgcatcattcgcttcggcgacgaggtgaaggtgatcatcaaa
gctgccaacttgctcgaccgtaccatcgacctggagctggtgtcgttgccgcgcaatgcc
ggccgcgctgcccgcccccgcgaagagttcggcgaccgggctccgcgccagcgccccagc
ggccgcggtgtggcaggtggtactggcggcgatggccgctcgcgccgcgaaggcggccgc
tcggcttccgacaagcccaagcccaaaggcaaaggccgcagccgctaccacggctaa
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