Hymenobacter oligotrophus: D3Y59_16105
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Entry
D3Y59_16105 CDS
T05656
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hyh
Hymenobacter oligotrophus
Pathway
hyh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hyh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D3Y59_16105 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyh03021
]
D3Y59_16105 (rpoC)
03400 DNA repair and recombination proteins [BR:
hyh03400
]
D3Y59_16105 (rpoC)
Enzymes [BR:
hyh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D3Y59_16105 (rpoC)
Transcription machinery [BR:
hyh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D3Y59_16105 (rpoC)
DNA repair and recombination proteins [BR:
hyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D3Y59_16105 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
OST_IS
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AYA38434
UniProt:
A0A3B7R2X5
LinkDB
All DBs
Position
3751007..3755350
Genome browser
AA seq
1447 aa
AA seq
DB search
MAFAKTKKLVQDFSKVTISLASPEAILERSNGEVVKPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKI
GYLLGLPTKKLDQIIYYERYVVVQPGLLETEGVQQLDFLTEDEYLDIIDKLPRENQMLPN
EDPQKFIAKMGADALYMLLERLNLDELSYSLRDSAAHETSQQRKAEALKRLRVVEAFREA
NGRIENRPEWMVIRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRAEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKNMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDA
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPRLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGPAAVLEASMLMLASHNILNPANGAPIAVPSQDMVLGLYYVTKGKRTTEEEVVV
GEGRTFYSAEEVVIAINEGQLSKHAYIKVRTKVRDEEDNLVTKVIETVAGRVLFNLHVPE
EVGFVDELLTKKKLQQIISMVFKRTGMARTAQFLDDIKTLGFQSAYKGGLSMGLGDIQIP
VEKDQLIAQAQADVQAVTQNYQMGLITDNERYNQVIDIWTRINNQITETLMSRLEKEKQG
FNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKSLQGSVGEIIENPILSNFKEGLDVIE
YFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNDVDCGTLRGIETFALKDNEDI
VEPLAERILGRVAVHDIVDPLTDEVILTAGDEITEEVTRRIDQTSIESVEIRSVLTCEAK
RGICARCYGRNLSTGRMVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAVEASIR
AKFAGVIEFEDVRTVDSVNAEGEPVKVVMGRSGEVRIVEKGTGKVFISNHVPYGSFLLVE
EGQEVEKGQELNNWDPYNAVILAEFDGAVNYEGIKEGVTYREESDEQTGYREKVVIESKD
KTLAPALVIKAGKKGGDESQKAYNIPVGSHINVENGEKIKAGHILAKIPRAVGKTRDITG
GLPRVTELFEARNPSNPAVVSEIDGVVTYGTVKRGNREIFVESKDGVRKKYMVPLSKHIL
VQDNDFIRAGAPLSDGAITPTDILNIQGPGAVQEYLVNEIQEVYRLQGVKINDKHIEVVV
RQMMQKVVIMDPGDTSFLEHQTVDKITFMEENDAIIDMKVVTDEGDSTILKRGQIVTARK
LRDENSSLRRRDLKLVEVRDASPAVSRPTLQGITQASLGTQSFISAASFQETTKVLSEAA
IRGKADELLGLKENVIVGHLIPAGTGLREYTRIQVGSTEDPEPVAAAPAASEAKPRASRS
KREVSAE
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgcaaaaacgaaaaagctggttcaagacttctcgaaagttaccatctcgctc
gcctctcccgaagctattctggagcgctcgaacggggaagtggtgaaacccgagacgatc
aactaccgcacgtacaagcccgaaatgggcggcttgttctgcgagcggatcttcggaccg
gtaaaagactgggagtgccactgcggcaaatacaagcgcattcgctacaagggcattatc
tgcgaccgttgcggcgtggaggtgaccgagaagaaagtgcgccgcgagcggatgggccac
atcgaactggtggtacccgttgcgcacatctggtacttcaagtcgctgcccaacaaaatt
ggttatctgctgggcctgcccaccaagaagctcgaccagatcatctactacgagcgttac
gtggtagtgcagccgggcttgctggaaacggaaggcgtacagcaactcgacttcctgacg
gaggacgaatacctggacatcatcgacaagctcccgcgcgagaaccagatgctgcccaac
gaggatccgcagaagttcatcgccaagatgggcgccgacgcgctgtacatgctgctcgag
cgtctgaacctggacgagctgagctactcactgcgtgactccgccgctcacgagacttca
cagcagcgtaaggctgaggccttgaagcgtctgcgtgtagtagaagcgttccgcgaagcc
aacggccgcatcgaaaaccgccccgagtggatggtaattcgtatggtgccggtgattccg
ccggagctgcgcccgctcgtgcccctggacggtggccgttttgctacctccgacttgaac
gacctgtaccgtcgcgttatcatccgcaacaaccgccttaagcgcctgatcgagatcaag
gctccggaggtgattctgcgtaacgagaagcgcatgctgcaagaggctgtcgactcgctg
ttcgacaactcgcgtaaggtaaatgccgtgcgcgccgaaggcaaccgcgccctgaagtcg
ctgtccgatatgctgaaaggcaagcagggccgcttccgtcagaacctgctcggtaagcgc
gtcgactactcgggccgttctgttatcgtggtaggccccgagctgaagctgcacgagtgc
ggtctgccgaagaacatggcagccgagctgttcaagccgttcatcattcgcaagctcatc
gagcgcggcatcgtgaagacggtgaagtcggctaagaagatcgtagaccgcaaggacgct
gtggtatgggacatcctcgagaacgttctcaagggccacccggtgctgctgaaccgtgct
cctacgcttcaccgcctaggtatccaggcgttccagccgcgtctcatcgagggcaaggct
attcagctgcacccgctggtgtgtaccgccttcaacgccgactttgacggtgaccagatg
gctgtgcacgtacccctaggtccggccgctgtactggaagcctcgatgctgatgctggcg
tcgcataacatcctgaacccggccaacggcgcgcccatcgcggtaccgtcgcaggacatg
gttctgggtttgtactacgttaccaaaggcaagcgcaccaccgaagaggaagtagttgtg
ggcgaaggccgcacgttctactcggctgaggaggtggtaattgccatcaacgaaggccag
ctttcgaagcacgcctacattaaggtgcgtacgaaggtgcgcgacgaagaagacaatctc
gtgacgaaagttatcgagacggttgctggtcgtgtgctgttcaacctgcacgtacccgag
gaagtaggcttcgtagatgagctgctgaccaagaagaagctgcagcagatcatctcgatg
gtgttcaagcgtacgggcatggcccgcacggcgcagttcctcgacgacatcaagacgctg
ggcttccagtcggcttacaaaggtggtctgtcgatgggcctaggtgatatccagattccg
gtagagaaggaccaactgattgcccaggcgcaggccgacgtgcaggcagttacccagaac
taccagatgggtctgatcaccgacaacgagcgttacaaccaggttatcgacatctggacg
cgcatcaacaaccagatcaccgagacgctgatgtcgcgcctcgagaaggagaagcaaggc
ttcaactcgatctacatgatgatgcactcgggtgctcgtggttcgcgcgaacagatccgt
cagctcggcggtatgcgtggtctgatggccaagccccagaagtcgctgcaaggttcggtt
ggcgagattatcgaaaacccgattctgtctaacttcaaagaaggcctggacgtaatcgag
tactttatctcgacgcacggtgcccgtaagggtctggctgacaccgctctgaagacggct
gacgccggctacctgactcgtcgtctggttgacgtatcgcaagacgttatcgtgaacgac
gttgactgcggcacgctgcgtggtatcgaaacctttgctctgaaggacaacgaggatatc
gtggagccgctggccgagcgtatcctaggtcgcgtagccgttcacgacatcgtggacccg
ctgaccgacgaggttatcctgactgctggcgacgaaatcaccgaagaggttacccgtcgt
atcgaccagaccagcatcgaatcggtggaaatccgttccgtactgacctgcgaagccaag
cgtggtatttgcgcccgttgctacggccgtaacctctcgactggccgcatggtgcagaag
ggcgaggccgtaggtgtaattgctgctcagtcgatcggtgagcctggcacccagctgacg
ctgcgtaccttccacgtgggtggtaccgcctcgaacattgcggtagaagccagcatccgg
gccaaatttgccggtgtaattgagttcgaagacgtgcgcaccgttgattcggtgaatgca
gaaggcgaaccggtgaaagtggtgatgggtcgctcgggcgaagtacgtatcgtggagaaa
ggcaccggcaaggtgtttatctcgaaccacgtaccgtacggctcgttcctgcttgtcgaa
gaaggtcaggaggttgaaaagggccaagaactcaacaactgggacccctacaacgctgta
attctggccgaattcgatggtgccgtcaactacgagggtatcaaagaaggcgtaacctac
cgtgaggagtcggacgaacagaccggctaccgtgagaaagtggttatcgagtcgaaagac
aagaccctagctccggcgctggttatcaaggccggtaagaaaggcggcgacgagtcgcag
aaggcttacaacatccccgtaggctcgcacatcaacgtggagaacggcgagaagatcaag
gctggtcacattctggctaagatcccgcgcgccgttggcaagacccgcgacattaccggt
ggtctgccccgcgttaccgaactcttcgaagcccgtaacccgtcgaacccggcggtggta
tcggaaatcgacggtgtggtaacctacggtacggtgaagcgtggtaaccgcgaaatcttc
gtcgagtcgaaagacggcgtacgcaagaagtacatggtgccgctgtcgaagcacattctg
gtgcaagacaacgacttcatccgtgccggtgcgccgctgtcggatggtgccatcacgccg
acggatatcttgaacattcagggtcccggcgccgtgcaagagtacctcgtgaacgagatt
caggaagtataccgcttgcagggtgtgaaaatcaacgacaagcacatcgaggtggtagta
cgccagatgatgcagaaggtggttatcatggatccgggcgacacgtcgttcctcgagcac
cagaccgtggacaagatcacgttcatggaagaaaacgatgccatcatcgacatgaaggtg
gtaacggacgagggtgactcgacgattctgaagcgcggtcagatcgtgacggctcgtaag
ctgcgcgacgagaactcctcgctgcgccgccgcgacctgaagctggtagaagtgcgcgac
gcttcgccggccgtatcgcgccccacgctgcaaggcatcacgcaggcctcgctgggcaca
cagtcgtttatttcggctgcttcgttccaggaaacgaccaaggtgctgtcggaagctgcc
atccgtggcaaggcagacgaacttctaggtctgaaggagaacgtaatcgttggtcacctc
attccggccggtaccggtttgcgcgagtacacgcgcattcaggttggctcgacggaggat
ccggagccggttgctgccgctccggccgccagcgaagcaaagcctcgcgcaagccgtagc
aagcgcgaagtatcggccgagtaa
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integrated database retrieval system
