Hymenobacter oligotrophus: D3Y59_16700
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Entry
D3Y59_16700 CDS
T05656
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
hyh
Hymenobacter oligotrophus
Brite
KEGG Orthology (KO) [BR:
hyh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyh03019
]
D3Y59_16700 (hrpB)
Enzymes [BR:
hyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
D3Y59_16700 (hrpB)
Messenger RNA biogenesis [BR:
hyh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
D3Y59_16700 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
ResIII
AAA_30
AAA_19
nSTAND3
ChrB_N
Motif
Other DBs
NCBI-ProteinID:
AYA38541
UniProt:
A0A3B7RC75
LinkDB
All DBs
Position
complement(3871643..3874186)
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AA seq
847 aa
AA seq
DB search
MLLPNLPIQAALPELTAALQAHNRVVLQAPPGAGKTTLVPLALLEADWRQEGKILMLEPR
RLAARAAATRMAQLLGEPVGQTVGYRVRLENKVSAQTRIEVVTEGILTRLVQDDPALEGI
AAVLFDEFHERSLQADLGLALTLDAQSVLRPDLRLLVMSATLDAARLGTWLQAPVVSSEG
RMHPVATHYLSPRRAAGLPNRPAERMAELTPATVRQALAEHEGDVLVFLPGLADQRRVSE
RLEPALPAEVDLHVLHGELPLDKQDAALRPAPVGRRKVVLATSIAETSLTIEGVRVVVDA
GYARVPRFIPRTGLTTLETVPVSQAASDQRRGRAGRLGPGICYRLWTETDHDQLPAHLAP
EILTADLSSLTLELALWGATDATALQWLDVPPAPALAQARELLVRLGALTPAGQPTAHGR
ELARLGLPPRLGHLVVRGRELGHGPTACALAALLAERDVLRATDGQPAPPDLRLRLEALQ
TGRAPLPGLVADAGGVRRVREAAQALRNRAGVKAADLEPDTAGLLAALAYPDRLGQREGG
ERLRLVTGQRVALPSEFFAADDTFFAAAYLDGTAAAPRAAMAAPLSRTEVEELFAEQIEE
QSEVRFDATTGRVVARRLRRLGALVLSEANQPNPDAEAIAAALFEALKAADLRNLNWTEA
AQQLRERLTFLHLHFPEEWPDVSDEALLADAAEWLAPHLAGLRSLGEVARLDVAELLLQR
LPNGWAQRQELDRLAPSHLEVPSGSHVRIDYSEPAAPVLAVKLQEVFGLLDTPRIANGRV
PLTMHLLSPAQRPVQVTRDLRSFWQSGYFEVRKDLRGRYPKHPWPDDPLTAVPTKLTKKR
FEQSNGQ
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
gtgctcctccccaatttgcccattcaggcggcgctgcccgagcttacggctgcgctgcaa
gcccacaaccgcgtagtattgcaagcgccacccggcgccggcaaaactaccttggtaccg
ctggctttgctggaggctgattggcggcaggagggaaagattctgatgctggagccacgg
cgcttagccgcccgggcagccgcaacgcgcatggcgcagctgctgggcgagccggtgggc
caaaccgtgggataccgcgtgcgcctcgaaaacaaagtatcggcccaaacgcgcattgag
gttgtaaccgagggcattctgacgcgcttggtgcaagacgacccggcgctggaaggcatt
gctgccgtgctcttcgacgaatttcacgagcgcagcctacaggccgacctagggctggcg
cttacgctcgacgcccaaagcgttttgcgccccgatttgcgcctgctcgtgatgtcggct
acgctcgatgcggcccgactcggcacgtggttgcaggcgcccgtggttagcagcgaaggc
cgcatgcaccccgtggccacacactacctaagcccgcgccgcgccgccgggttgcccaac
cgccccgccgagcgcatggccgagcttacacctgccaccgtgcgccaggccttggccgag
cacgagggcgacgtgctggtgttcttgccgggcctcgccgaccaacgccgtgtaagcgaa
cggctggagccggccttgccggccgaggtagacttgcacgtgctgcacggcgagctgccg
ctcgataagcaggacgccgctctgcgccccgcgcccgtgggccgccgcaaagtggtgctg
gctaccagcattgccgaaaccagcctcaccattgagggggtgcgcgtagtggttgatgct
ggttatgcgcgcgtaccccggtttattccgcgtacgggcctcaccacgctcgaaaccgtg
cccgtaagtcaggccgcctccgaccagcgccgcggccgcgccgggcgcctgggtcccggc
atctgctaccgcctctggacggaaaccgaccacgaccagctgccggcgcatctggcaccc
gaaattctcacggccgacctcagcagccttacgcttgagctggccttgtggggcgccacc
gatgcaacggccctgcaatggctcgatgtaccgcctgcccccgccctagcgcaagcccgc
gagttgctggtgcgcctaggtgcccttacccccgcggggcagcccaccgcccacgggcgc
gagttggcccgcctaggtttgccgccgcgcttggggcacctggtagtgcgcggccgcgag
ctgggccacggccctacggcatgtgccctggcggccctgctggccgaacgcgacgtgctg
cgcgccaccgatggccaacccgccccgcccgacttgcgcctacgcctcgaagccttacaa
accggccgtgccccgctgcccggcctcgtagccgatgccggcggtgtgcgccgcgtgcgc
gaagccgcgcaggccttgcgcaaccgggccggcgtaaaagccgccgacctcgagcccgac
accgcaggcctgttggctgccctcgcctaccccgaccgcctgggtcagcgcgaaggcggc
gagcggctgcggctggttacaggccaacgcgtggctttgccaagtgagtttttcgctgcc
gacgacaccttcttcgctgccgcttacctcgatggcaccgccgccgcgccgcgcgccgcc
atggctgccccgctaagccggaccgaagtggaagagctgtttgccgagcaaattgaggag
cagagcgaggtgcgctttgatgccaccaccggccgcgtggtagcgcgccgcttgcgccgc
ctaggtgccttggtgctcagcgaagccaaccagcccaaccccgatgcagaggcaattgcc
gcagcgttgttcgaagcactaaaggcagccgacctacgcaacctgaactggacggaagca
gcccagcaactgcgcgagcggctgacctttttgcacttgcacttccctgaggagtggccc
gatgtatcggacgaagccttactggccgacgccgccgagtggctggctccgcatttggct
ggtttgcgcagcctaggtgaggtagcccgcctcgacgtggcagagctgctgctccaacgc
ttgcccaacggttgggcgcagcgccaagagctcgatcgactggcgccttcgcacctcgag
gtccccagcggctcgcacgtgcgcatcgactatagcgagccagcggcgcccgtgctagcc
gtgaagctgcaagaagtgtttggcctgctcgatacgccgcgcattgccaacggacgcgtg
ccgcttaccatgcacctgctctcgccggcccaacgccccgtgcaggttacccgcgatttg
cgcagcttctggcagtcgggctacttcgaggtgcgcaaagacctgcgcggccgctacccc
aagcacccctggcccgacgacccgcttacggctgtgcccaccaagctcaccaaaaagcgc
ttcgagcaaagcaacgggcagtag
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