Hymenobacter oligotrophus: D3Y59_17020
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Entry
D3Y59_17020 CDS
T05656
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hyh
Hymenobacter oligotrophus
Pathway
hyh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D3Y59_17020 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyh03019
]
D3Y59_17020 (recQ)
03400 DNA repair and recombination proteins [BR:
hyh03400
]
D3Y59_17020 (recQ)
Enzymes [BR:
hyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D3Y59_17020 (recQ)
Messenger RNA biogenesis [BR:
hyh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D3Y59_17020 (recQ)
DNA repair and recombination proteins [BR:
hyh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D3Y59_17020 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
AYA38600
UniProt:
A0A3B7R5H0
LinkDB
All DBs
Position
complement(3940263..3942494)
Genome browser
AA seq
743 aa
AA seq
DB search
MSEAANTAELTAPVKKAAKPLGADLKAKLKEVFGYGQFRGTQEAIIQNVIEGHNTFVIMP
TGAGKSLCYQLPALVLPGTAIVISPLIALMKNQVDQLNAFGVNAQVMNSTLTKTEANKVK
RDVINGDVKLLYVAPESLTKDETLDFLQKATISFVAIDEAHCISEWGHDFRPEYRRIRGI
IDNIGMNVPIIALTATATPKVQLDIQKNLQMDDASVFKSSFNRTNLYYEVRPKHQTKKAL
IQFVKGMKGQAGIVYCLSRKKVEEIAELLRVNDVRALPYHAGLDPQTRMHNQDAFLNEEC
DVIVATIAFGMGIDKPDVRFVIHYDTPKSIEGYYQETGRAGRDGLDGHCLMFYSYDDIVK
LEKFNKDKPVTERDNSKLLLQEMANYADSAVCRRKQLLHYFGEVYEKDCGFCDNCKHPRE
KYEAKDFVKLALQAVQQTEERFGIEHLTTVLTGMKNPHVESYGHDRLPVYGRGAEHDMPF
WHSVIRQCMIASFLEKDIENFGVVKMAEKGEAFLLEPYSIKFSKDHNYEEEVQQEEQKEE
VQQSAGHDAALFDMLKALRKKLAAQKGLPPYVLFQDPSLKEMATTFPVKMEDLAHVSGVG
QGKAQKFGAPFLELIKKYVEENDIVTAADVVVKSAVNKSKIKIYIIQQIDKKMDLEEIAS
AKGIDMRELIEEIEHICYSGTKLNLNYYIDSVLDQDRQDEIYDYFMSATTDNIAVALKEL
GTDDYTEEDLRLMRIKFLSEVAN
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagcagcaaacacagcagaacttacggctcccgttaaaaaggctgccaaaccc
ctaggggctgatttgaaggccaagttaaaggaagtttttggctacggtcagttccgaggt
acgcaggaagccatcatccaaaacgtcatcgaaggccacaataccttcgtgattatgccc
acgggcgcgggtaagtcgctgtgctatcagttgccggctttggtgttgccgggtacggcc
atcgttatttcgccgctcattgccctgatgaaaaaccaggtcgatcagctgaatgctttc
ggggtgaatgcgcaggtgatgaactccacgctcaccaaaaccgaagccaacaaggttaag
cgcgacgtgattaacggcgacgtaaagctgctgtacgtggcgcccgagtcgcttaccaag
gacgaaacgctcgactttctgcagaaggctactatctcgttcgtggccatcgacgaggcg
cactgcatttcggagtggggccacgacttccggcccgagtaccgccgcatccgcggcatc
atcgacaacattgggatgaacgtgcccatcattgccctcacggcaacggccactcccaag
gtgcagctcgatattcagaaaaacctgcagatggacgacgcttcggtgtttaagtcgtcg
ttcaaccgcaccaacctttactacgaggttcggcccaagcaccagaccaaaaaggccctc
attcagtttgtaaagggcatgaaaggccaggcaggtattgtgtactgcttgagccgcaag
aaggtagaagaaattgccgagttgctgcgcgtcaacgacgtgcgcgccctcccctaccac
gccggcctcgacccgcaaacgcgcatgcacaaccaggacgcgttcctgaacgaagagtgc
gacgtgattgtggcgaccattgcgttcggcatgggcattgataagcccgatgtgcgcttc
gtgattcactacgacacgccgaagagcatcgaaggctactaccaggaaaccggccgcgcc
ggccgcgacgggctcgacggccactgcctaatgttctacagctacgacgacatcgtgaag
ctggagaagttcaacaaggacaagcccgtaaccgaacgcgacaacagcaagctgctgctg
caggaaatggccaactacgccgattcggcggtgtgccgccgcaagcagctgctgcactac
ttcggcgaggtgtacgaaaaggactgcggcttttgcgacaactgcaagcacccgcgcgag
aagtacgaggccaaggattttgtgaagctggccttgcaggccgtgcagcaaaccgaggag
cgcttcggtattgagcacttgaccacggtgctcacgggcatgaaaaacccgcatgtggag
agctacggccacgaccgcctgcccgtgtacggcagaggcgccgagcacgatatgcccttc
tggcactcggttatccggcagtgcatgattgccagcttcctcgaaaaagacatcgagaat
tttggcgtggtgaagatggccgaaaaaggcgaagcctttttgctggagccgtactccatc
aagttctcgaaggaccacaactacgaggaagaagtacagcaggaagagcagaaagaagaa
gtgcagcaatcggctgggcacgatgccgcgctgttcgacatgctgaaggccttgcgcaag
aaactggccgcccagaaaggcctgccgccctacgtgctgtttcaggacccctcgctgaaa
gaaatggctaccaccttccccgtgaagatggaagacctcgcgcacgtgtcgggcgtaggc
caaggcaaagcgcagaagtttggtgcgcccttcctggagctgatcaagaagtatgtggag
gaaaacgacattgtaacggctgccgacgtggtagtaaaatcggccgttaacaagtcgaaa
atcaagatctacatcattcaacagatcgacaaaaagatggacctggaggaaattgcttcc
gccaagggcatcgatatgcgcgagctgattgaggagattgagcacatttgctactcgggc
acgaagctcaacctcaattactacatcgactcggtactcgaccaagaccgccaagacgag
atttacgactacttcatgagcgccaccaccgataacattgcggtggccctgaaggaactc
ggcaccgacgactacaccgaggaagacttgcgcctgatgcgcatcaaattcctgagcgag
gtggcaaactaa
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integrated database retrieval system
